| Literature DB >> 31296259 |
Hyunhee Do1, Dain Kim1, JiHoon Kang2, Beomseok Son2, Danbi Seo1, HyeSook Youn3, BuHyun Youn4,5, Wanyeon Kim6,7.
Abstract
BACKGROUND: Non-small cell lung cancer (NSCLC) is one of the leading causes of death in the world. NSCLC diagnosed at an early stage can be highly curable with a positive prognosis, but biomarker limitations make it difficult to diagnose lung cancer at an early stage. To identify biomarkers for lung cancer development, we previously focused on the oncogenic roles of transcription factor TFAP2C in lung cancers and revealed the molecular mechanism of several oncogenes in lung tumorigenesis based on TFAP2C-related microarray analysis.Entities:
Keywords: GADD45B; Lung tumorigenesis; PMAIP1; TFAP2C; Tumor suppressor
Mesh:
Substances:
Year: 2019 PMID: 31296259 PMCID: PMC6625030 DOI: 10.1186/s40659-019-0244-5
Source DB: PubMed Journal: Biol Res ISSN: 0716-9760 Impact factor: 5.612
Primers for determining expression levels of TFAP2C, GADD45B and PMAIP1
| Gene | Forward primer | Reverse primer |
|---|---|---|
|
| 5′-ACAGGATCCATGTTGTGGAAAATAACCGAT-3′ | 5′-ATACTCGAGTTTCCTGTGTTTCTCCATTTT-3′ |
|
| 5′-GTCGGCCAAGTTGATGAAT-3′ | 5′-CACGATGTTGATGTCGTTGT-3′ |
|
| 5′-AGATGCCTGGGAAGAAG-3′ | 5′-AGTCCCCTCATGCAAGT-3′ |
|
| 5′-TGAGAGGGAAATCGTGCGTG-3′ | 5′-TGCTTGCTGATCCACATCTGC-3′ |
Fig. 1Schematic of the process used to identify TFAP2C-target genes functioning as tumor suppressors based on the microarray data (GSE79228)
Tumor suppressive genes negatively regulated by TFAP2C in NSCLC
| Gene | Location | Mechanism of tumorigenesis | Biological activity | Reference (PMID) |
|---|---|---|---|---|
|
| Chromosome 19, NC_000019.10 (2476125..2478259) | Activation of MTK1-p38 pathway | Cell cycle arrest and apoptosis | 12933797 |
| Activation of CDKN1A expression | Cell cycle arrest and apoptosis | 27572311 | ||
| Decrease of JNK and STAT5 | Apoptosis and anti-proliferation | 30279966 | ||
|
| Chromosome 18, NC_000018.10 (59899960..59904306) | Decrease of USP9X-MCL1 pathway | Apoptosis | 24991768 |
| Activation of Beclin-1 via decrease of MCL1 | Autophagy and cell death | 21353614 | ||
| Activation of the mitochondrial apoptotic pathway via interaction with BIM | Apoptosis | 26497683 | ||
|
| Chromosome 17, NC_000017.11 (6755408..6775647) | Activation of Beclin-1 and decrease of Akt pathway | Apoptosis, autophagy, and cell death | 21788101 |
| Decrease of VEGF | Apoptosis, anti-proliferation, and anti-angiogenesis | 24980821 | ||
|
| Chromosome 1, NC_000001.11 (206897404..206904139) | Activation of eIF2α phosphorylation | Apoptosis | 28461326 |
| Decrease of Wnt/β-catenin signaling | Apoptosis and anti-angiogenesis | 23720015 | ||
|
| Chromosome 1, NC_000001.11 (212565334..212620777) | Activation of PMAIP1 | Apoptosis | 29352505 |
| Activation of Smad signaling | Cell death | 20930144 | ||
|
| Chromosome 1, NC_000001.11 (85580761..85583967) | Activation of integrin α6-ROS-p38 pathway via activation of p53 | Anti-proliferation | 26028023 |
| Decrease of MMP-2 | Anti-cell motility and anti-invasion | 19632997 | ||
|
| Chromosome 8, NC_000008.11 (13083361..13604616, complement) | Decrease of RhoA | Anti-angiogenesis | 28408355 |
| Decrease of VEGF via EGFR-MEK-HIF pathway | Anti-angiogenesis | 20861185 | ||
|
| Chromosome 6, NC_000006.12 (137866317..137883314) | Decrease of AKT1/TRIO/RAC1 pathway | Inhibition of EMT, anti-migration and anti-invasion | 27676292 |
| Decrease of Wnt signaling via interaction with β-catenin destruction complex | Apoptosis and anti-angiogenesis | 23671587 | ||
|
| Chromosome 2, NC_000002.12 (20447071..20449445) | Activation of E-cadherin and decrease of Vimentin | Anti-migration and anti-invasion | 28253718 |
| Decrease of NF-κB signaling | Anti-angiogenesis, anti-migration and anti-invasion | 20383180 |
Fig. 2The expression patterns of nine selected genes in NSCLC based on analysis of the Oncomine database. a The Bhattacharjee dataset showed GADD45B downregulation in lung adenocarcinoma compared with the normal lung counterparts (fold change = –8.080, p = 5.52E−5). b The Weiss dataset showed PMAIP1 downregulation in lung adenocarcinoma (fold change = − 1.067, p = 4.15E−6). c The Hou dataset showed XAF1 downregulation in lung adenocarcinoma (fold change = − 1.441, p = 9.90E−5). d The Selamat dataset showed CYR61 downregulation in lung adenocarcinoma (fold change = − 2.381, p = 5.54E−10. e The Bhattacharjee dataset showed IL24 downregulation in lung adenocarcinoma (fold change = − 1.972, p = 0.011). f The Landi dataset showed ATF3 downregulation in lung adenocarcinoma (fold change = − 2.589, p = 1.70E−8). g The Okayama dataset showed DLC1 downregulation in lung adenocarcinoma (fold change = − 2.541, p = 3.04E−13). h The Landi dataset showed RHOB downregulation in lung adenocarcinoma (fold change = − 1.950, p = 3.03E−11). i The Selamat dataset showed TNFAIP3 downregulation in lung adenocarcinoma (fold change = − 1.901, p = 4.03E−9)
Fig. 3TFAP2C induces GADD45B and PMAIP1 downregulation in NSCLC cells. a The mRNA expression levels of GADD45B and PMAIP1 in TFAP2C-overexpressing WI-26 VA4 cells were examined by qRT-PCR. *p < 0.05 compared to non-treated cells or cells treated with control vector. b–e The mRNA expression levels of GADD45B and PMAIP1 in TFAP2C siRNA-treated NCI-H292 (b), NCI-H358 (c), NCI-H460 (d), and A549 (e) cells were examined by qRT-PCR. *p < 0.05 compared to non-treated cells or cells treated with control siRNA. f The protein expression levels of GADD45B and PMAIP1 in TFAP2C-overexpressing WI-26 VA4 cells were examined by Western blotting. g The protein expression levels of GADD45B and PMAIP1 in TFAP2C siRNA-treated NCI-H292, NCI-H358, NCI-H460, and A549 cells were examined by Western blotting
Fig. 4Short-term effects of TFAP2C, GADD45B, and PMAIP1 expression levels on NSCLC cell proliferation. a The effects of TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown on cell proliferation of WI-26 VA4 cells were measured by using cell viability assays. *p < 0.05 compared to cells treated with control vector or control siRNA. b–e The effects of TFAP2C, GADD45B, and/or PMAIP1 knockdown on cell proliferation of NCI-H292 (b), NCI-H358 (c), NCI-H460 (d), or A549 (e) cells were measured by using cell viability assays. *p < 0.05 compared to cells treated with control siRNA, **p < 0.05 compared to cells treated with TFAP2C siRNA
Fig. 5Long-term effects of TFAP2C, GADD45B, and PMAIP1 expression levels on NSCLC cell proliferation. a The effects of TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown on cell proliferation of WI-26 VA4 cells were measured using colony-forming assays. b Quantitative analysis of the number of WI-26 VA4 cell clones after TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown was performed. The colonies of TFAP2C-overexpressing cells set at 100%. *p < 0.05 compared to cells treated with control vector or control siRNA. c The effects of TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown on WI-26 VA4 cell apoptosis were determined using caspase 3/7 assays. *p < 0.05 compared to cells treated with control vector or control siRNA. d The effects of TFAP2C, GADD45B, and/or PMAIP1 knockdown on cell proliferation of NCI-H292, NCI-H358, NCI-H460, or A549 cells were measured by using colony-forming assays. Representative images of each group are presented. e Quantitative analysis of the number of four NSCLC cell clones after the treatments was performed. The colonies of non-treated control cells set at 100%. *p < 0.05 compared to cells treated with control siRNA, **p < 0.05 compared to cells treated with TFAP2C siRNA. f The effects of TFAP2C, GADD45B, and/or PMAIP1 knockdown on apoptosis of NCI-H292, NCI-H358, NCI-H460, or A549 cells were measured by using caspase 3/7 assays. *p < 0.05 compared to cells treated with control siRNA, **p < 0.05 compared to cells treated with TFAP2C siRNA
Fig. 6The effects of TFAP2C, GADD45B, and PMAIP1 expression levels on NSCLC cell motility. a The effects of TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown on cell motility of WI-26 VA4 cells were measured by using wound-healing assays. Representative images of each group are presented. b The graphs show the percentage of the available area covered by WI-26 VA4 cells from five randomly selected images. Representative images of each group at different times are presented. *p < 0.05 compared to cells treated with control vector or control siRNA. c The effects of TFAP2C overexpression, GADD45B knockdown, or PMAIP1 knockdown on cell migration capacity of WI-26 VA4 cells were measured by using transwell cell migration assays. *p < 0.05 compared to cells treated with control vector or control siRNA. d The effects of TFAP2C, GADD45B, and/or PMAIP1 knockdown on cell motility of NCI-H292, NCI-H358, NCI-H460, or A549 cells were measured by using wound-healing assays. Representative images of each group are presented. e The graphs show the percentage of the available area covered by four NSCLC cell lines from five randomly selected images. *p < 0.05 compared to cells treated with control siRNA, **p < 0.05 compared to cells treated with TFAP2C siRNA. f The effects of TFAP2C, GADD45B, and/or PMAIP1 knockdown on cell migration capacity of NCI-H292, NCI-H358, NCI-H460, or A549 cells were measured by using transwell cell migration assays. *p < 0.05 compared to cells treated with control siRNA, **p < 0.05 compared to cells treated with TFAP2C siRNA