Literature DB >> 31287989

Pan-cancer Convergence to a Small-Cell Neuroendocrine Phenotype that Shares Susceptibilities with Hematological Malignancies.

Nikolas G Balanis1, Katherine M Sheu1, Favour N Esedebe1, Saahil J Patel1, Bryan A Smith2, Jung Wook Park2, Salwan Alhani1, Brigitte N Gomperts3, Jiaoti Huang4, Owen N Witte5, Thomas G Graeber6.   

Abstract

Small-cell neuroendocrine cancers (SCNCs) are an aggressive cancer subtype. Transdifferentiation toward an SCN phenotype has been reported as a resistance route in response to targeted therapies. Here, we identified a convergence to an SCN state that is widespread across epithelial cancers and is associated with poor prognosis. More broadly, non-SCN metastases have higher expression of SCN-associated transcription factors than non-SCN primary tumors. Drug sensitivity and gene dependency screens demonstrate that these convergent SCNCs have shared vulnerabilities. These common vulnerabilities are found across unannotated SCN-like epithelial cases, small-round-blue cell tumors, and unexpectedly in hematological malignancies. The SCN convergent phenotype and common sensitivity profiles with hematological cancers can guide treatment options beyond tissue-specific targeted therapies.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dependency Map (depmap); RNA interference screen; SCLC; TCGA; blood cancer; drug sensitivity screen; pan-cancer signatures; pharmacogenomics; small-cell neuroendocrine; transdifferentiation

Mesh:

Year:  2019        PMID: 31287989      PMCID: PMC6703903          DOI: 10.1016/j.ccell.2019.06.005

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  78 in total

1.  A morphologic and statistical comparative study of small-cell carcinoma and non-Hodgkin's lymphoma in fine-needle aspiration biopsy material from lymph nodes.

Authors:  Luis E De Las Casas; Murat Gokden; Perkins Mukunyadzi; Peter White; Sandra J Baker; Paul L Hermonat; Hong You; Soheila Korourian; Sharp F Malak; Roberto N Miranda
Journal:  Diagn Cytopathol       Date:  2004-10       Impact factor: 1.582

2.  pcaMethods--a bioconductor package providing PCA methods for incomplete data.

Authors:  Wolfram Stacklies; Henning Redestig; Matthias Scholz; Dirk Walther; Joachim Selbig
Journal:  Bioinformatics       Date:  2007-03-07       Impact factor: 6.937

Review 3.  Cell cycle kinases as therapeutic targets for cancer.

Authors:  Silvia Lapenna; Antonio Giordano
Journal:  Nat Rev Drug Discov       Date:  2009-07       Impact factor: 84.694

4.  Ewing sarcoma vs lymphoblastic lymphoma. A comparative immunohistochemical study.

Authors:  D R Lucas; G Bentley; M E Dan; P Tabaczka; J M Poulik; M P Mott
Journal:  Am J Clin Pathol       Date:  2001-01       Impact factor: 2.493

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

6.  The epidemiology and survival of extrapulmonary small cell carcinoma in South East England, 1970-2004.

Authors:  Yien Ning S Wong; Ruth H Jack; Vivian Mak; Møller Henrik; Elizabeth A Davies
Journal:  BMC Cancer       Date:  2009-06-29       Impact factor: 4.430

7.  The small molecule GMX1778 is a potent inhibitor of NAD+ biosynthesis: strategy for enhanced therapy in nicotinic acid phosphoribosyltransferase 1-deficient tumors.

Authors:  Mark Watson; Anne Roulston; Laurent Bélec; Xavier Billot; Richard Marcellus; Dominique Bédard; Cynthia Bernier; Stéphane Branchaud; Helen Chan; Kenza Dairi; Karine Gilbert; Daniel Goulet; Michel-Olivier Gratton; Henady Isakau; Anne Jang; Abdelkrim Khadir; Elizabeth Koch; Manon Lavoie; Michael Lawless; Mai Nguyen; Denis Paquette; Emilie Turcotte; Alvin Berger; Matthew Mitchell; Gordon C Shore; Pierre Beauparlant
Journal:  Mol Cell Biol       Date:  2009-08-24       Impact factor: 4.272

8.  The HDAC inhibitor trichostatin A inhibits growth of small cell lung cancer cells.

Authors:  Christopher S Platta; David Yü Greenblatt; Muthusamy Kunnimalaiyaan; Herbert Chen
Journal:  J Surg Res       Date:  2007-07-05       Impact factor: 2.192

9.  Rank-rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures.

Authors:  Seema B Plaisier; Richard Taschereau; Justin A Wong; Thomas G Graeber
Journal:  Nucleic Acids Res       Date:  2010-07-21       Impact factor: 16.971

10.  Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1.

Authors:  David A Barbie; Pablo Tamayo; Jesse S Boehm; So Young Kim; Susan E Moody; Ian F Dunn; Anna C Schinzel; Peter Sandy; Etienne Meylan; Claudia Scholl; Stefan Fröhling; Edmond M Chan; Martin L Sos; Kathrin Michel; Craig Mermel; Serena J Silver; Barbara A Weir; Jan H Reiling; Qing Sheng; Piyush B Gupta; Raymond C Wadlow; Hanh Le; Sebastian Hoersch; Ben S Wittner; Sridhar Ramaswamy; David M Livingston; David M Sabatini; Matthew Meyerson; Roman K Thomas; Eric S Lander; Jill P Mesirov; David E Root; D Gary Gilliland; Tyler Jacks; William C Hahn
Journal:  Nature       Date:  2009-10-21       Impact factor: 49.962

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  39 in total

Review 1.  Lineage plasticity in cancer: a shared pathway of therapeutic resistance.

Authors:  Álvaro Quintanal-Villalonga; Joseph M Chan; Helena A Yu; Dana Pe'er; Charles L Sawyers; Triparna Sen; Charles M Rudin
Journal:  Nat Rev Clin Oncol       Date:  2020-03-09       Impact factor: 66.675

Review 2.  Unraveling cancer lineage drivers in squamous cell carcinomas.

Authors:  Yinglu Guan; Guan Wang; Danielle Fails; Priyadharsini Nagarajan; Yejing Ge
Journal:  Pharmacol Ther       Date:  2019-12-11       Impact factor: 12.310

3.  Therapeutic targeting of ATR yields durable regressions in small cell lung cancers with high replication stress.

Authors:  Anish Thomas; Nobuyuki Takahashi; Vinodh N Rajapakse; Xiaohu Zhang; Yilun Sun; Michele Ceribelli; Kelli M Wilson; Yang Zhang; Erin Beck; Linda Sciuto; Samantha Nichols; Brian Elenbaas; Janusz Puc; Heike Dahmen; Astrid Zimmermann; Jillian Varonin; Christopher W Schultz; Sehyun Kim; Hirity Shimellis; Parth Desai; Carleen Klumpp-Thomas; Lu Chen; Jameson Travers; Crystal McKnight; Sam Michael; Zina Itkin; Sunmin Lee; Akira Yuno; Min-Jung Lee; Christophe E Redon; Jessica D Kindrick; Cody J Peer; Jun S Wei; Mirit I Aladjem; William Douglas Figg; Seth M Steinberg; Jane B Trepel; Frank T Zenke; Yves Pommier; Javed Khan; Craig J Thomas
Journal:  Cancer Cell       Date:  2021-04-12       Impact factor: 31.743

4.  Cancer Cells Retrace a Stepwise Differentiation Program during Malignant Progression.

Authors:  Sadegh Saghafinia; Iacovos P Michael; Krisztian Homicsko; Annunziata Di Domenico; Stephan Wullschleger; Aurel Perren; Ilaria Marinoni; Giovanni Ciriello; Douglas Hanahan
Journal:  Cancer Discov       Date:  2021-04-28       Impact factor: 39.397

5.  Melanoma dedifferentiation induced by IFN-γ epigenetic remodeling in response to anti-PD-1 therapy.

Authors:  Yeon Joo Kim; Katherine M Sheu; Jennifer Tsoi; Gabriel Abril-Rodriguez; Egmidio Medina; Catherine S Grasso; Davis Y Torrejon; Ameya S Champhekar; Kevin Litchfield; Charles Swanton; Daniel E Speiser; Philip O Scumpia; Alexander Hoffmann; Thomas G Graeber; Cristina Puig-Saus; Antoni Ribas
Journal:  J Clin Invest       Date:  2021-06-15       Impact factor: 14.808

6.  Whole-exome sequencing reveals germline-mutated small cell lung cancer subtype with favorable response to DNA repair-targeted therapies.

Authors:  Camille Tlemsani; Nobuyuki Takahashi; Lorinc Pongor; Vinodh N Rajapakse; Manoj Tyagi; Xinyu Wen; Grace-Ann Fasaye; Keith T Schmidt; Parth Desai; Chul Kim; Arun Rajan; Shannon Swift; Linda Sciuto; Rasa Vilimas; Santhana Webb; Samantha Nichols; William Douglas Figg; Yves Pommier; Kathleen Calzone; Seth M Steinberg; Jun S Wei; Udayan Guha; Clesson E Turner; Javed Khan; Anish Thomas
Journal:  Sci Transl Med       Date:  2021-01-27       Impact factor: 17.956

7.  Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity.

Authors:  Navin R Mahadevan; Erik H Knelson; Jacquelyn O Wolff; Amir Vajdi; Maria Saigí; Marco Campisi; Deli Hong; Tran C Thai; Brandon Piel; Saemi Han; Bruce B Reinhold; Jonathan S Duke-Cohan; Michael J Poitras; Luke J Taus; Patrick H Lizotte; Andrew Portell; Victor Quadros; Alison D Santucci; Takahiko Murayama; Israel Cañadas; Shunsuke Kitajima; Aoi Akitsu; Maya Fridrikh; Hideo Watanabe; Brendan Reardon; Prafulla C Gokhale; Cloud P Paweletz; Mark M Awad; Eliezer M Van Allen; Ana Lako; Xi-Tao Wang; Benjamin Chen; Fangxin Hong; Lynette M Sholl; Michael Y Tolstorukov; Kathleen Pfaff; Pasi A Jänne; Evisa Gjini; Robin Edwards; Scott Rodig; Ellis L Reinherz; Matthew G Oser; David A Barbie
Journal:  Cancer Discov       Date:  2021-03-11       Impact factor: 39.397

8.  The MEK5-ERK5 Kinase Axis Controls Lipid Metabolism in Small-Cell Lung Cancer.

Authors:  Sandra Cristea; Garry L Coles; Daniel Hornburg; Maya Gershkovitz; Julia Arand; Siqi Cao; Triparna Sen; Stuart C Williamson; Jun W Kim; Alexandros P Drainas; Andrew He; Laurent Le Cam; Lauren Averett Byers; Michael P Snyder; Kévin Contrepois; Julien Sage
Journal:  Cancer Res       Date:  2020-01-22       Impact factor: 12.701

9.  RNA Splicing Factors SRRM3 and SRRM4 Distinguish Molecular Phenotypes of Castration-Resistant Neuroendocrine Prostate Cancer.

Authors:  Mark P Labrecque; Lisha G Brown; Ilsa M Coleman; Bryce Lakely; Nicholas J Brady; John K Lee; Holly M Nguyen; Dapei Li; Brian Hanratty; Michael C Haffner; David S Rickman; Lawrence D True; Daniel W Lin; Hung-Ming Lam; Joshi J Alumkal; Eva Corey; Peter S Nelson; Colm Morrissey
Journal:  Cancer Res       Date:  2021-07-26       Impact factor: 12.701

10.  Binary pan-cancer classes with distinct vulnerabilities defined by pro- or anti-cancer YAP/TEAD activity.

Authors:  Joel D Pearson; Katherine Huang; Marek Pacal; Sean R McCurdy; Suying Lu; Arthur Aubry; Tao Yu; Kristine M Wadosky; Letian Zhang; Tao Wang; Alex Gregorieff; Mohammad Ahmad; Helen Dimaras; Ellen Langille; Susan P C Cole; Philippe P Monnier; Benjamin H Lok; Ming-Sound Tsao; Nagako Akeno; Daniel Schramek; Kathryn A Wikenheiser-Brokamp; Erik S Knudsen; Agnieszka K Witkiewicz; Jeffrey L Wrana; David W Goodrich; Rod Bremner
Journal:  Cancer Cell       Date:  2021-07-21       Impact factor: 31.743

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