Literature DB >> 17344241

pcaMethods--a bioconductor package providing PCA methods for incomplete data.

Wolfram Stacklies1, Henning Redestig, Matthias Scholz, Dirk Walther, Joachim Selbig.   

Abstract

UNLABELLED: pcaMethods is a Bioconductor compliant library for computing principal component analysis (PCA) on incomplete data sets. The results can be analyzed directly or used to estimate missing values to enable the use of missing value sensitive statistical methods. The package was mainly developed with microarray and metabolite data sets in mind, but can be applied to any other incomplete data set as well. AVAILABILITY: http://www.bioconductor.org

Mesh:

Year:  2007        PMID: 17344241     DOI: 10.1093/bioinformatics/btm069

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  337 in total

1.  XCMS Online: a web-based platform to process untargeted metabolomic data.

Authors:  Ralf Tautenhahn; Gary J Patti; Duane Rinehart; Gary Siuzdak
Journal:  Anal Chem       Date:  2012-05-10       Impact factor: 6.986

2.  Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data.

Authors:  Carmen D Tekwe; Raymond J Carroll; Alan R Dabney
Journal:  Bioinformatics       Date:  2012-05-24       Impact factor: 6.937

3.  A comparative analysis of biclustering algorithms for gene expression data.

Authors:  Kemal Eren; Mehmet Deveci; Onur Küçüktunç; Ümit V Çatalyürek
Journal:  Brief Bioinform       Date:  2012-07-06       Impact factor: 11.622

4.  Biological impact of missing-value imputation on downstream analyses of gene expression profiles.

Authors:  Sunghee Oh; Dongwan D Kang; Guy N Brock; George C Tseng
Journal:  Bioinformatics       Date:  2010-11-02       Impact factor: 6.937

5.  Evolution of stickleback in 50 years on earthquake-uplifted islands.

Authors:  Emily A Lescak; Susan L Bassham; Julian Catchen; Ofer Gelmond; Mary L Sherbick; Frank A von Hippel; William A Cresko
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

6.  Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering.

Authors:  Peng Sun; Nora K Speicher; Richard Röttger; Jiong Guo; Jan Baumbach
Journal:  Nucleic Acids Res       Date:  2014-03-20       Impact factor: 16.971

7.  An Untargeted Metabolomics Analysis of Antipsychotic Use in Bipolar Disorder.

Authors:  Kyle J Burghardt; Simon J Evans; Kristen M Wiese; Vicki L Ellingrod
Journal:  Clin Transl Sci       Date:  2015-08-27       Impact factor: 4.689

8.  Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii.

Authors:  Marie-Caroline Steinhauser; Dirk Steinhauser; Karin Koehl; Fernando Carrari; Yves Gibon; Alisdair R Fernie; Mark Stitt
Journal:  Plant Physiol       Date:  2010-03-24       Impact factor: 8.340

9.  The delayed effect of wildfire season particulate matter on subsequent influenza season in a mountain west region of the USA.

Authors:  Erin L Landguth; Zachary A Holden; Jonathan Graham; Benjamin Stark; Elham Bayat Mokhtari; Emily Kaleczyc; Stacey Anderson; Shawn Urbanski; Matt Jolly; Erin O Semmens; Dyer A Warren; Alan Swanson; Emily Stone; Curtis Noonan
Journal:  Environ Int       Date:  2020-03-31       Impact factor: 9.621

10.  Indoor versus Outdoor Air Quality during Wildfires.

Authors:  K P Messier; L G Tidwell; C C Ghetu; D Rohlman; R P Scott; L M Bramer; H M Dixon; K M Waters; K A Anderson
Journal:  Environ Sci Technol Lett       Date:  2019-11-11
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