Literature DB >> 31285597

A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.

Lukas Reisky1, Aurélie Préchoux2, Marie-Katherin Zühlke3,4, Marcus Bäumgen1, Craig S Robb5,6, Nadine Gerlach5,6, Thomas Roret7, Christian Stanetty8, Robert Larocque7, Gurvan Michel2, Tao Song5,6, Stephanie Markert3,4, Frank Unfried3,4, Marko D Mihovilovic8, Anke Trautwein-Schult9, Dörte Becher9, Thomas Schweder10,11, Uwe T Bornscheuer12, Jan-Hendrik Hehemann13,14.   

Abstract

Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a sustainable raw material for the bioeconomy. The potential exploitation of algae is hindered by our limited knowledge of the microbial pathways-and hence the distinct biochemical functions of the enzymes involved-that convert algal polysaccharides into oligo- and monosaccharides. Understanding these processes would be essential, however, for applications such as the fermentation of algal biomass into bioethanol or other value-added compounds. Here, we describe the metabolic pathway that enables the marine flavobacterium Formosa agariphila to degrade ulvan, the main cell wall polysaccharide of bloom-forming Ulva species. The pathway involves 12 biochemically characterized carbohydrate-active enzymes, including two polysaccharide lyases, three sulfatases and seven glycoside hydrolases that sequentially break down ulvan into fermentable monosaccharides. This way, the enzymes turn a previously unexploited renewable into a valuable and ecologically sustainable bioresource.

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Year:  2019        PMID: 31285597     DOI: 10.1038/s41589-019-0311-9

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  28 in total

1.  Mobility shift-based electrophoresis coupled with fluorescent detection enables real-time enzyme analysis of carbohydrate sulfatase activity.

Authors:  Dominic P Byrne; James A London; Patrick A Eyers; Edwin A Yates; Alan Cartmell
Journal:  Biochem J       Date:  2021-02-26       Impact factor: 3.857

Review 2.  If you eat it, or secrete it, they will grow: the expanding list of nutrients utilized by human gut bacteria.

Authors:  Robert W P Glowacki; Eric C Martens
Journal:  J Bacteriol       Date:  2020-11-09       Impact factor: 3.490

3.  New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink "waters," and NGL Viewer to recapture online 3D graphics.

Authors:  Michael G Prisant; Christopher J Williams; Vincent B Chen; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2019-12-10       Impact factor: 6.725

4.  Biological upgrading of 3,6-anhydro-L-galactose from agarose to a new platform chemical.

Authors:  Dong Hyun Kim; Jing-Jing Liu; Jae Won Lee; Jeffrey G Pelton; Eun Ju Yun; Sora Yu; Yong-Su Jin; Kyoung Heon Kim
Journal:  Green Chem       Date:  2020-02-24       Impact factor: 10.182

5.  Sulfated glycan recognition by carbohydrate sulfatases of the human gut microbiota.

Authors:  Ana S Luis; Arnaud Baslé; Dominic P Byrne; Gareth S A Wright; James A London; Chunsheng Jin; Niclas G Karlsson; Gunnar C Hansson; Patrick A Eyers; Mirjam Czjzek; Tristan Barbeyron; Edwin A Yates; Eric C Martens; Alan Cartmell
Journal:  Nat Chem Biol       Date:  2022-06-16       Impact factor: 16.174

Review 6.  Discovery of novel pathways for carbohydrate metabolism.

Authors:  Tyler M M Stack; John A Gerlt
Journal:  Curr Opin Chem Biol       Date:  2020-11-13       Impact factor: 8.822

7.  A genomic view of the microbiome of coral reef demosponges.

Authors:  S J Robbins; W Song; J P Engelberts; B Glasl; B M Slaby; J Boyd; E Marangon; E S Botté; P Laffy; T Thomas; N S Webster
Journal:  ISME J       Date:  2021-01-19       Impact factor: 10.302

8.  Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan.

Authors:  Andreas Sichert; Christopher H Corzett; Matthew S Schechter; Frank Unfried; Stephanie Markert; Dörte Becher; Antonio Fernandez-Guerra; Manuel Liebeke; Thomas Schweder; Martin F Polz; Jan-Hendrik Hehemann
Journal:  Nat Microbiol       Date:  2020-05-25       Impact factor: 17.745

9.  Genes for degradation and utilization of uronic acid-containing polysaccharides of a marine bacterium Catenovulum sp. CCB-QB4.

Authors:  Go Furusawa; Nor Azura Azami; Aik-Hong Teh
Journal:  PeerJ       Date:  2021-03-09       Impact factor: 2.984

10.  Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.

Authors:  Ole Christian Hagestad; Lingwei Hou; Jeanette H Andersen; Espen H Hansen; Bjørn Altermark; Chun Li; Eric Kuhnert; Russell J Cox; Pedro W Crous; Joseph W Spatafora; Kathleen Lail; Mojgan Amirebrahimi; Anna Lipzen; Jasmyn Pangilinan; William Andreopoulos; Richard D Hayes; Vivian Ng; Igor V Grigoriev; Stephen A Jackson; Thomas D S Sutton; Alan D W Dobson; Teppo Rämä
Journal:  IMA Fungus       Date:  2021-08-09       Impact factor: 3.515

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