Nucleoside analogues are among the most common medications given for the treatment of viral infections and cancers. The therapeutic effectiveness of nucleoside analogues can be dramatically improved by phosphorylation. The ProTide approach was developed using a phosphorylated nucleoside that is masked by esterification with an amino acid and phenol forming a chiral phosphorus center. The biological activity of the ProTides depends, in part, on the stereochemistry at phosphorus, and thus, it is imperative that efficient methods be developed for the chemical synthesis and isolation of diastereomerically pure ProTides. Chiral ProTides are often synthesized by direct displacement of a labile phenol (p-nitrophenol or pentafluorophenol) from a chiral phosphoramidate precursor with the appropriate nucleoside analogue. The ability to produce these chiral products is dictated by the synthesis of the chiral phosphoramidate precursors. The enzyme phosphotriesterase (PTE) from Pseudomonas diminuta is well-known for its high stereoselectivity and broad substrate profile. Screening PTE variants from enzyme evolution libraries enabled the identification of variants of PTE that can stereoselectively hydrolyze the chiral phosphoramidate precursors. The variant G60A-PTE exhibits a 165-fold preference for hydrolysis of the RP isomer, while the variant In1W-PTE has a 1400-fold preference for hydrolysis of the SP isomer. Using these mutants of PTE, the SP and RP isomers were isolated on a preparative scale with no detectable contamination of the opposite isomer. Combining the simplicity of the enzymatic resolution of the precursor with the latest synthetic strategy will facilitate the production of diastereometrically pure nucleotide phosphoramidate prodrugs.
Nucleoside analogues are among the most common medications given for the treatment of viral infections and cancers. The therapeutic effectiveness of nucleoside analogues can be dramatically improved by phosphorylation. The ProTide approach was developed using a phosphorylated nucleoside that is masked by esterification with an amino acid and phenol forming a chiral phosphorus center. The biological activity of the ProTides depends, in part, on the stereochemistry at phosphorus, and thus, it is imperative that efficient methods be developed for the chemical synthesis and isolation of diastereomerically pure ProTides. Chiral ProTides are often synthesized by direct displacement of a labile phenol (p-nitrophenol or pentafluorophenol) from a chiral phosphoramidate precursor with the appropriate nucleoside analogue. The ability to produce these chiral products is dictated by the synthesis of the chiral phosphoramidate precursors. The enzyme phosphotriesterase (PTE) from Pseudomonas diminuta is well-known for its high stereoselectivity and broad substrate profile. Screening PTE variants from enzyme evolution libraries enabled the identification of variants of PTE that can stereoselectively hydrolyze the chiral phosphoramidate precursors. The variant G60A-PTE exhibits a 165-fold preference for hydrolysis of the RP isomer, while the variant In1W-PTE has a 1400-fold preference for hydrolysis of the SP isomer. Using these mutants of PTE, the SP and RP isomers were isolated on a preparative scale with no detectable contamination of the opposite isomer. Combining the simplicity of the enzymatic resolution of the precursor with the latest synthetic strategy will facilitate the production of diastereometrically pure nucleotide phosphoramidate prodrugs.
With more
than 20 clinically
available examples, nucleoside analogues have become the standard
of care for viral infections and cancer (reviewed in refs (1) and (2)). These compounds typically
inhibit DNA and RNA polymerases or result in accumulated mutations
and chain terminations, which further disrupt genomic replication.
The specificity of these compounds, such as acyclovir, for viral polymerases
over host polymerases has made it the standard of care for herpes
simplex virus and varicella zoster virus.[2] While the value of nucleoside analogues is well proven clinically,
their use has been limited because of poor bioavailability, the need
for active transport into cells, and the requirement for cellular
phosphorylation to be therapeutically active (reviewed in refs (3−5)).The most successful method for overcoming
the challenges of nucleoside
analogues has been the development of the nucleoside phosphoramidate
prodrugs (ProTides, prodrug and nucleotides).[1,2] For
many nucleoside analogues, the limiting step in the cellular activation
of these compounds is phosphorylation, resulting in the development
of drug resistance by downregulation of the relevant kinases.[3,5] The ProTides, such as Sofosbuvir and Tenofovir Alafenamide, overcome
this deficiency by starting with a phosphorylated or phosphonylated
prodrug (Scheme ).
The multiple negative charges on the phosphorylated nucleoside analogues,
which would normally lead to poor bioavailability and cellular uptake,
are masked in the prodrugs by amide and ester bond formation.[6] This strategy of masking the phosphate moiety
significantly increases the hydrophobic nature of the prodrugs, which
enables cellular entry via passive diffusion across the membrane,
and gives the added benefit of substantially increasing the oral bioavailability,
as well as overcoming resistance due to downregulation of the transporter.[7,8]
Scheme 1
Structures of Selected ProTides
The success of the ProTide approach has led to the Food
and Drug
Administration approval of Sofosbuvir and Tenofovir Alafenamide for
viral infections, and several other compounds are in clinical trials
to treat HIV, hepatitis C, and Ebola, as well as two compounds being
tested as cancer treatments.[1,2] Regardless of the condition
being treated, all ProTides are delivered to the cell as prodrugs
that must undergo intracellular activation to form the active compound.
In the case of the nucleotide analogues, the mechanism of activation
is fairly well understood.[9−11] In the first activation step,
the ester group of the amino acid is hydrolyzed by a peptidase or
esterase. The enzymes responsible for the in vivo cleavage of this bond are known to be stereoselective, leading to
widely differing activities depending on the stereochemistry of the
prodrug.[9,10,12,13] For example, the SP isomer
of Sofosbuvir exhibits activty that is 18-fold better than that of
the RP isomer against hepatitis C.[14] Tenofovir Alafenamide shows a similar dependence,
with the SP isomer being 12-fold more
active against HIV than the RP isomer.[15]For both Sofosbuvir and Tenofovir Alafenamide,
the SP isomer is more active. However,
MK-3682, developed by
Merck, is the RP isomer and is activated
approximately 20-fold faster than the SP isomer.[16] MK-3682 was found to be highly
effective in clinical trials, demonstrating that for some ProTides
the SP isomer will be more active while
with others the RP isomer is more desirable.[17]The ProTide approach is not limited to
nucleoside analogues. There
are currently efforts to apply the ProTide technology to deliver bioactive
compounds for the treatment of osteoarthritis, Parkinson’s
disease, multiple sclerosis, African sleeping sickness, and tuberculosis,
making apparent the need to develop robust methods for the synthesis
of diastereomerically pure ProTides.[18−22] The most common synthetic route for ProTides involves
reaction of an O-aryl, N-amino acid
phosphochloridate precursor with the desired nucleoside analogue (Scheme ).[2,23] The
simple base-catalyzed reaction can couple the nucleoside to the 5′-
or 3′-hydroxyl group, and the desired product is formed as
a diastereomeric mixture.[23,24] Various protection
schemes have been employed to prevent side product formation, but
the required deprotection is generally inefficient.[2,25] Merck
has reported improved stereoselective syntheses using small molecule
catalysts to enhance the yield of the RP isomers.[26] However, these methods are
not universal for all nucleoside analogues and still face the difficulties
of side product formation and the need to separate the two diastereomers.
An alternative method was recently developed to generate a chiral
phosphoramidate diester intermediate with a labile aromatic group
(p-nitrophenol or pentafluorophenol), which allows
for a crystallographic separation of the two isomers prior to base-catalyzed
substitution of the labile leaving group resulting in diastereomerically
pure ProTide products.[27] This strategy
was further advanced by the use of Lewis acids to catalyze the substitution
reaction to control the regioselectivity without the need for protecting
groups (Scheme ).[24] Using dimethylaluminum chloride as the Lewis
acid, a wide variety of ProTides can be synthesized in good yields
and with minimal side products.
Scheme 2
Base-Catalyzed Synthesis of a Nucleotide
Phosphoramidate Prodrug
Scheme 3
Lewis Acid-Catalyzed Synthesis of a Diastereomerically Pure
Nucleotide
Phosphoramidate Diester
The current state of the art in synthetic methodology
enables the
production of various ProTides with high purities However, the ultimate
obstacle to diastereomeric purity lies in the efficient diastereomeric
separation of the chiral precursor. The chiral separation of these
compounds generally requires differential crystallization or chiral
chromatography, which are both difficult and inefficient. The most
common precursors used in the synthesis of the ProTides are chiral
phosphoramidate diesters such as compound 1. The enzyme
phosphotriesterase from Pseudomonas diminuta (PTE)
has a broad substrate specificity and excellent stereoselectivity,
which has allowed its use in chiral resolution with multiple types
of phosphorus-containing compounds.[28−30] The adaptation of PTE
for both detoxification and chemical synthesis methodologies has yielded
many variants of the enzyme with enhanced, as well as reversed, stereoselectivity.[28,31−35] To explore whether PTE could be utilized to prepare diastereomerically
pure precursors for ProTide synthesis, variants from several enzyme
libraries were screened for their ability to selectively hydrolyze
a chiral p-nitrophenyl-containing ProTide precursor
(1). The phosphotriesterase from Sphingobium sp. TCM1 (Sb-PTE) was also tested and found to
hydrolyze both isomers of the precursor, but with the SP isomer, any one of the three bonds to phosphorus is
cleaved. Variants of the P. diminuta PTE were identified
with >100-fold chiral selectivity for either the SP or RP isomers. The use of
the simple PTE variant G60A (G60A-PTE), as well as a previously uncharacterized
variant of PTE with a 10-amino acid insertion in loop 7 (In1W-PTE),
allowed the preparative isolation of pure SP and RP isomers of compound 1. The purified isomers were recovered by simple organic extraction,
allowing facile isolation on a preparative scale, with no apparent
contamination of the opposing isomer.
Materials and Methods
Chemicals
and Enzymes
Laboratory chemicals were from
Sigma-Aldrich, general laboratory supplies from VWR, and growth media
from RPI Corp. Protein production and purification were as previously
described.[36,37] The purified enzymes were stored
at −80 °C prior to use.
Chemical Synthesis of Compound 1
Compound 1 was synthesized using a
modified method of Ross et al.[27] Briefly,
a stirred solution of phenyl dichlorophosphate
(1.1 mL, 7.0 mmol, 95%) and p-nitrophenol (0.97 g,
7.0 mmol) in 100 mL of anhydrous ether was cooled to −15 °C.
Triethylamine (0.98 mL, 7.0 mmol) was added dropwise, and the reaction
mixture stirred for 4 h at 0 °C. Solid byproducts were filtered,
washed with ether, and discarded. l-Alanine isopropyl ester
hydrochloride (1.2 g, 7.0 mmol) was added to the liquid phase, followed
by triethylamine (1.96 mL, 14.0 mmol), and the mixture stirred for
16 h at room temperature (23 °C). The reaction mixture was filtered,
and after concentration, the residue was purified by silica gel column
chromatography (3:1, 2:1, and 1:1 hexanes/ethyl acetate mixtures)
yielding 0.72 g (25%) of the product as a mixture of diastereomers
in a 93:100 ratio as a colorless oil: 1H NMR (400 MHz,
CDCl3) δ 8.25 (dd, J = 9.0 and 1.8
Hz, 2H), 7.44–7.33 (m, 4H), 7.28–7.18 (m, 3H), 5.08–4.98
(m, 1H), 4.17–4.06 (m, 1H), 3.92–3.85 (m, 1H), 1.44–1.40
(m, 3H), 1.27–1.23 (m, 6H); 31P NMR (160 MHz, CDCl3) δ −3.17 (s), −3.21 (s).
PTE Variants
The mutant A80V/K185R/I274N is a wild-type-like
variant of PTE with high expression levels and will be called wild-type
PTE hereafter.[38,39] The variants G60A and I106G/F132G/H257Y
were previously identified in prior investigations that focused on
altering the stereoselectivity of PTE.[29,30] The variant
H257Y/L303T was identified as stereoselective for phosphonate substrates.[35] PTE-In1W was originally found during the screening
of a 254X/257X enzyme library for catalytic activity against DEVX.[36] This variant has a 10-amino acid insertion in
the sequence for loop 7, which originally arose as a cloning artifact.
The genetic identity of PTE In1W is F132L/H254S/H257W/257_258insSAIGLDPIPN.
Additional variants were screened on the basis of their observed stereoselectivity
with V-agent analogues.[28]
Screening for
Stereoselective Variants
PTE variants
were screened for their ability to stereoselectively hydrolyze the
two isomers of compound 1 by a total hydrolysis reaction.[35] Reactions were conducted in a final volume of
1.0 mL with 60 μM compound 1, 100 μM CoCl2, 50 mM CHES (pH 9.0), and 1% methanol. Reactions were initiated
by the addition of 10 μL of the enzyme (final concentrations
of 0.5–2 μM) or 1 M KOH, and the reactions were followed
at 400 nm (E400 = 17000 M–1 cm–1 for p-nitrophenol) with
a Molecular Devices Spectramax 384 Plus spectrophotometer. Stock solutions
of compound 1 were prepared in methanol.
Complementation
Assays
Variants that demonstrated enhanced
stereoselective hydrolysis of compound 1 were used in
complementation assays to determine if these enzymes preferred the
same or opposite stereochemistry at the phosphorus center. The relative
concentrations of each enzyme were determined so that they hydrolyzed
the faster isomer at roughly the same rate. Reaction mixtures had
a total volume of 1.0 mL with 60 μM compound 1,
100 μM CoCl2, 50 mM CHES (pH 9.0), and 1% methanol.
The reactions were initiated by the addition of the first enzyme.
Once the first enzyme had consumed its preferred diastereomer, the
second enzyme was added to the reaction mixture. If the two variants
preferred the opposite diastereomer, the addition of the second enzyme
enabled the hydrolysis of the other remaining isomer. If the two variants
preferred the same diastereomer, no additional hydrolysis was observed.
31P Nuclear Magnetic Resonance (NMR) Analysis of
Enzymatic Reactions
To enable the identification of the specific
diastereomer being hydrolyzed by wild-type PTE, G60A-PTE, In1W-PTE,
and Sb-PTE, the reaction products were interrogated
by 31P NMR. Reactions were conducted in a reaction volume
of 4.0 mL with 2.0 mM compound 1, 30% methanol, and 50
mM HEPES (pH 8.0). The progress of the reaction was monitored by removing
small aliquots and measurement of the absorbance at 400 nm. At various
time points, 1.0 mL samples were removed from the reaction mixture,
and the enzyme was removed by ultrafiltration using a Vivaspin 500
(GE Healthcare) centrifugal filtration device. The sample was brought
to 10 mM EDTA in 20% D2O, and the 31P NMR spectrum
recorded using a sample volume of 750 μL.
Isolation of
Individual Diastereomers
The RP diastereomer of compound 1 was isolated
by selective hydrolysis of the SP diastereomer
using In1W-PTE. Compound 1 (50 mg) was dissolved in methanol
and added to a 50 mL reaction mixture, containing 30% methanol, 50
mM HEPES (pH 8.0), and 500 nM In1W-PTE. The progress of the reaction
was monitored by removing 10 μL aliquots, which were then diluted
to 1.0 mL, and the absorbance at 400 nM was recorded. Once the reaction
had exceeded 50% completion, the methanol was removed by rotary evaporation
and the remaining RP diastereomer was
extracted using dichloromethane (3 × 30 mL). The organic phase
was washed with copious amounts of 50 mM HEPES (pH 8.0) to remove
contaminating p-nitrophenol, dried over Na2SO4, and the solvent removed by rotary evaporation. A
total of 20 mg of pure RP-1 was recovered. The SP diastereomer of
compound 1 was isolated by selective hydrolysis of the RP diastereomer from the racemic mixture using
G60A-PTE. Conditions and purification were performed as described
above except 5.0 μM G60A-PTE was used and the reaction was allowed
to proceed to ∼65% completion. A total of 14 mg of the pure SP isomer was recovered.
Steady State Kinetics
The steady state kinetic constants
with racemic compound 1 and the isolated SP and RP diastereomers were
determined for WT-PTE, G60A-PTE, In1W-PTE, and Sb-PTE. Reactions were conducted in a volume of 250 μL with 10%
methanol, 50 mM CHES (pH 9.0), and 10–250 μM compound 1 at 30 °C. Reactions with WT-PTE, G60A-PTE, and In1W-PTE
were supplemented with 0.1 mM CoCl2. The reactions with Sb-PTE were supplemented with 1.0 mM MnCl2. Reactions
were initiated by the addition of 10 μL of the appropriately
diluted enzyme and followed using a Molecular Devices Spectramax 384
Plus spectrophotometer in a 96-well plate format. None of the tested
enzymes demonstrated saturation by the substrate at 250 μM,
so the data were fit to a linear equation to enable the calculation
of kcat/Km.
Results and Discussion
Screening of PTE Variants
Variants
of PTE with differing
stereochemical preferences were screened for their ability to hydrolyze
the two isomers of compound 1. Of the 57 variants screened,
52 exhibited no or weak stereoselectivity with compound 1. Of the five variants that did show selectivity, four showed a preference
for one diastereomer, and only G60A-PTE preferred the other diastereomer.
The preliminary screening results are summarized in Table S1.Wild-type PTE completely hydrolyzed racemic
compound 1 with an apparent single-exponential phase
(Figure a). At relatively
low concentrations, the reactions appear to stop at approximately
50% of the expected value with G60A-PTE and In1W-PTE, suggesting that
these variants preferentially hydrolyzed one diastereomer. At a 20-fold
higher concentration, G60A-PTE clearly hydrolyzes the second diastereomer
of compound 1, but at a much slower rate (Figure b). In1W-PTE did not exhibit
significant hydrolysis of the second diastereomer even at a 20-fold
higher enzyme concentration, suggesting a very strong preference for
one of the two diastereomers. To determine if the identified variants
preferred the same diastereomer or the opposite diastereomer, a complementation
assay was utilized. As demonstrated in Figure c, the hydrolysis reaction is first initiated
by one enzyme and once the first diastereomer is consumed the second
enzyme is added. If the two variants prefer the same diastereomer,
the rate will not increase. However, if the second variant prefers
the other diastereomer, the rate will dramatically increase as observed
in the case of In1W-PTE and G60A-PTE. Sb-PTE was
found to apparently hydrolyze ∼60% of the sample in the screen;
however, neither G60A-PTE nor In1W-PTE could complement this catalytic
activity.
Figure 1
Stereoselective hydrolysis of 60 μM compound 1. (a) Chemical hydrolysis by 1 M KOH (black) and enzymatic hydrolysis
by 100 nM wild-type PTE (blue), 700 nM G60A-PTE (red), and 3.6 nM
In1W-PTE (green). (b) Chemical hydrolysis by 1 M KOH (black) and enzymatic
hydrolysis by 14 μM G60A-PTE (red) or 72 nM In1W-PTE (green).
(c) Complementation assay with In1W-PTE and G60A. Chemical hydrolysis
by 1 M KOH (black). Enzymatic hydrolysis (blue) was initiated by addition
of 7.2 nM In1W-PTE, and then 1.0 μM G60A-PTE was added at 700
s.
Stereoselective hydrolysis of 60 μM compound 1. (a) Chemical hydrolysis by 1 M KOH (black) and enzymatic hydrolysis
by 100 nM wild-type PTE (blue), 700 nM G60A-PTE (red), and 3.6 nM
In1W-PTE (green). (b) Chemical hydrolysis by 1 M KOH (black) and enzymatic
hydrolysis by 14 μM G60A-PTE (red) or 72 nM In1W-PTE (green).
(c) Complementation assay with In1W-PTE and G60A. Chemical hydrolysis
by 1 M KOH (black). Enzymatic hydrolysis (blue) was initiated by addition
of 7.2 nM In1W-PTE, and then 1.0 μM G60A-PTE was added at 700
s.
Identification of the Preferred
Isomers
The 31P NMR chemical shifts of the two
diastereomers of compound 1 have been previously identified
with the resonance for the SP isomer being
downfield of the RP isomer in dimethyl
sulfoxide.[27] While the chemical shift changes
significantly, a similar relationship
was found using either methanol or water as the solvent with the SP isomer always being downfield of the RP isomer (Figure S1). When wild-type PTE is used to hydrolyze compound 1, there is a small, but observable, preference for hydrolysis of
the RP isomer (Figure ). The chemical synthesis of 1 results in a small excess of the RP diastereomer.
Figure 2
31P NMR spectra of compound 1 and hydrolysis
product in water. (a) Two diastereomers of compound 1. The chemical shift of the SP isomer
is at −1.43 ppm, while the RP isomer
is at −1.54 ppm. (b) Hydrolysis of compound 1 by
wild-type PTE at ∼60% completion. The single phosphorus-containing
hydrolysis product is observed at 2.05 ppm. (c) Complete hydrolysis
of compound 1 by wild-type PTE.
31P NMR spectra of compound 1 and hydrolysis
product in water. (a) Two diastereomers of compound 1. The chemical shift of the SP isomer
is at −1.43 ppm, while the RP isomer
is at −1.54 ppm. (b) Hydrolysis of compound 1 by
wild-type PTE at ∼60% completion. The single phosphorus-containing
hydrolysis product is observed at 2.05 ppm. (c) Complete hydrolysis
of compound 1 by wild-type PTE.The hydrolysis of 1 by G60A-PTE results in a much more dramatic stereoselective
effect. With G60A, the RP isomer is depleted
much faster than the SP isomer, and thus
when the reaction reaches ∼30% completion, the ratio of the SP isomer to the RP isomer is approximately 2:1 (Figure b). When the reaction is ∼60%
complete, the SP:RP ratio has increased to 4.6:1 (Figure c). Among the variants that preferred the
opposite isomer to G60A-PTE, the In1W-PTE mutant had the highest activity.
As observed during the initial screening, In1W-PTE also has a stronger
stereoselectivity than G60A-PTE. In the reaction catalyzed by In1W
at ∼40% completion, the SP:RP ratio is 1:3.5 (Figure d). When the reaction is just more than 50%
complete, there is no detectable resonance for the SP isomer.
Figure 3
31P NMR spectra showing the differential hydrolysis
of 1 by variants of PTE. (a) 31P NMR spectrum
of compound 1 (2 mM). SP-1 resonates at −1.43 ppm, while RP-1 resonates at −1.54 ppm. (b) Hydrolysis of 1 by 3 μM PTE-G60A. The reaction is ∼28% complete.
The single phosphorus-containing product resonates at 2.05 ppm. (c)
Reaction from spectrum b at ∼60% completion. (d) Hydrolysis
of 1 by 0.1 μM PTE-In1W. The reaction is ∼38%
complete. (e) Reaction from spectrum d at ∼50% completion.
31P NMR spectra showing the differential hydrolysis
of 1 by variants of PTE. (a) 31P NMR spectrum
of compound 1 (2 mM). SP-1 resonates at −1.43 ppm, while RP-1 resonates at −1.54 ppm. (b) Hydrolysis of 1 by 3 μM PTE-G60A. The reaction is ∼28% complete.
The single phosphorus-containing product resonates at 2.05 ppm. (c)
Reaction from spectrum b at ∼60% completion. (d) Hydrolysis
of 1 by 0.1 μM PTE-In1W. The reaction is ∼38%
complete. (e) Reaction from spectrum d at ∼50% completion.
Preparative Isolation of
Isomers
The strong stereoselectivity
obtained with G60A-PTE and In1W-PTE suggested that these variants
could be used to isolate pure diastereomers of compound 1. Large-scale preparative reactions were initiated to resolve 50
mg of the diastereomeric mixture. To ensure complete removal of the RP isomer, the reaction catalyzed by 5.0 μM
G60A-PTE was allowed to proceed to approximately 65% completion (∼4
h). The recovery of the remaining unreacted isomer of 1 resulted in the isolation of 14 mg of the pure SP isomer (Figure b). The higher selectivity of In1W enabled the reaction to
be stopped at ∼50% completion (∼1 h), and 20 mg of the
pure RP isomer was recovered (Figure c). In both cases,
there was no detectable contamination from the opposite isomer (≥98%
enantiomeric excess).
Figure 4
31P NMR spectra of isolated RP and SP isomers of 1 in
methanol. (a) NMR spectrum of the initial mixture of the RP and SP isomers of 1. The SP isomer resonates at
−1.52 ppm, and the RP isomer resonates
at −1.69 ppm. (b) Isolated SP isomer
obtained by selective hydrolysis using PTE-G60A. (c) Isolated RP isomer obtained by selective hydrolysis using
PTE-In1W. (d) Mixture of samples from spectra b and c.
31P NMR spectra of isolated RP and SP isomers of 1 in
methanol. (a) NMR spectrum of the initial mixture of the RP and SP isomers of 1. The SP isomer resonates at
−1.52 ppm, and the RP isomer resonates
at −1.69 ppm. (b) Isolated SP isomer
obtained by selective hydrolysis using PTE-G60A. (c) Isolated RP isomer obtained by selective hydrolysis using
PTE-In1W. (d) Mixture of samples from spectra b and c.
Stereochemical Preferences of Sb-PTE
When tested in the initial screen, Sb-PTE did not
appear to completely hydrolyze the mixture of diastereomers of compound 1. To determine the stereoselectivity of Sb-PTE for the hydrolysis of 1, the purified SP and RP isomers of 1 were hydrolyzed separately and the products analyzed by 1H and 31P NMR spectroscopy (Figure and Figure S4). With the SP isomer, ∼27% of
the product formed was due to the hydrolysis of the bond to p-nitrophenol. Phenol cleavage accounted for 65% of the
product formed, and ∼7% was due to hydrolysis of the phosphorus–nitrogen
bond. The aromatic region of the 1H NMR spectrum is in
good agreement with this product distribution with two clear resonances
present for the p-nitrophenyl substituent attached
to phosphorus and as p-nitrophenol in solution (Figure S4). The hydrolysis of the RP isomer resulted in the nearly exclusive hydrolysis of
the p-nitrophenol substituent with a minor product
(4%), which may be due to hydrolysis of the isopropyl ester bond.
Figure 5
Hydrolysis of 1 by Sb-PTE.
(a) Hydrolysis
of the isolated SP isomer by Sb-PTE. The resonance at 2.31 ppm is the product of hydrolysis of p-nitrophenol. The resonance at 1.61 ppm is due to the product
from hydrolysis of phenol, and the resonance at −10.45 ppm
is due to the product of hydrolysis of the phosphoramidate bond. (b)
Hydrolysis of the isolated RP isomer by Sb-PTE. (c) Hydrolysis of the isolated RP isomer by wild-type PTE.
Hydrolysis of 1 by Sb-PTE.
(a) Hydrolysis
of the isolated SP isomer by Sb-PTE. The resonance at 2.31 ppm is the product of hydrolysis of p-nitrophenol. The resonance at 1.61 ppm is due to the product
from hydrolysis of phenol, and the resonance at −10.45 ppm
is due to the product of hydrolysis of the phosphoramidate bond. (b)
Hydrolysis of the isolated RP isomer by Sb-PTE. (c) Hydrolysis of the isolated RP isomer by wild-type PTE.To determine the magnitude of
the stereochemical preferences, the isolated isomers were used to
measure steady state kinetic constants of the various enzymes used
in this investigation (Table ). Due to the limited solubility of compound 1 in water, the highest concentration possible was ∼250 μM.
None of the variants tested dial">splayed substrate saturation at this
concentration, and thus, only the kcat/Km values were obtained from linear
fits to the data. WT-PTE demonstrated reasonable catalytic activity
with compound 1 with a kcat/Km of 4.7 × 104 M–1 s–1 for the faster isomer and a
preference for the RP isomer relative
to the SP isomer of 6:1. G60A-PTE was
considerably slower with a kcat/Km of 2.8 × 103 M–1 s–1 for the faster RP isomer and a preference of 170, relative to the SP isomer. The mutant In1W-PTE showed the best activity
of any variant tested with a kcat/KM of 2.3 × 105 M–1 s–1 for the preferred S -isomer
and a catalytic preference of 1400 relative to the RP isomer. Sb-PTE exhibited essentially
no stereoselectivity for compound 1. However, as has
been seen with other compounds, the major hydrolysis product from
the SP isomer is due to the cleavage of
phenol rather than p-nitrophenol.[40]
Table 1
Kinetic Constants for the Enzymatic
Hydrolysis of Compound 1
substrate
enzyme
kcat/Km (M–1 s–1)
RP/SP-1
WT-PTE
(4.2 ± 0.1) × 104
G60A-PTE
(2.7 ± 0.1) × 103
In1W-PTE
(1.9 ± 0.4) × 105
Sb-PTE
(1.92 ± 0.03) × 103
SP-1
WT-PTE
(7.4 ± 0.1) × 103
G60A-PTE
(1.69 ± 0.03) × 10
In1W-PTE
(2.25 ± 0.08) × 105
Sb-PTE
(p-NP)
(6.6 ± 0.2) × 102
Sb-PTE
(phenol)a
(2.3 ± 0.1) × 103
RP-1
WT-PTE
(4.7 ± 0.1) × 104
G60A-PTE
(2.83 ± 0.04) × 103
In1W-PTE
(1.6 ± 0.2) × 102
Sb-PTE
(3.0 ± 0.1) × 103
Calculated from product ratios.
Calculated from product ratios.
Conclusion
The ProTides are chiral phosphoramidates, which
require activation
by intracellular enzymes to achieve their active forms. The first
enzymatic activation step is stereoselective, leading to widely different
biological activity based on the stereochemistry at the phosphorus
center. The need to selectively synthesize pure diastereomers of the
ProTides has led to much progress in the synthesis, but the ability
to make pure diastereomers depends on the isolation of diastereomerically
pure precursors such as compound 1. Previous efforts
have utilized differential crystallization or chiral column chromatography
to prepare these chiral precursors. While these efforts have proven
to be successful, they are difficult and time-consuming. As an alternative
approach, diastereometrically pure precursors can be obtained by enzymatic
resolution. In this approach, the undesired isomer is preferentially
hydrolyzed by a stereoselective enzyme. The PTE mutant G60A-PTE displays
an ∼165-fold preference for the RP isomer of compound 1, allowing the SP isomer to be easily isolated. The In1W-PTE variant exhibits
even higher selectivity with a 1400-fold preference for the SP isomer, making the isolation of the RP isomer relatively straightforward. The hydrophobic
nature of compound 1 allows for the facile recovery of
the desired isomer via simple organic extraction on a preparative
scale. Combining this enzymatic methodology with the regioselective
synthesis methods developed by others will greatly simplify the preparation
of diasteromerically pure ProTides of either stereochemistry.
Authors: Dao Feng Xiang; Andrew N Bigley; Zhongjie Ren; Haoran Xue; Kenneth G Hull; Daniel Romo; Frank M Raushel Journal: Biochemistry Date: 2015-12-16 Impact factor: 3.162
Authors: Daniel A DiRocco; Yining Ji; Edward C Sherer; Artis Klapars; Mikhail Reibarkh; James Dropinski; Rose Mathew; Peter Maligres; Alan M Hyde; John Limanto; Andrew Brunskill; Rebecca T Ruck; Louis-Charles Campeau; Ian W Davies Journal: Science Date: 2017-04-28 Impact factor: 47.728
Authors: Laura Osgerby; Yu-Chiang Lai; Peter J Thornton; Joseph Amalfitano; Cécile S Le Duff; Iqra Jabeen; Hachemi Kadri; Ageo Miccoli; James H R Tucker; Miratul M K Muqit; Youcef Mehellou Journal: J Med Chem Date: 2017-03-28 Impact factor: 7.446