| Literature DB >> 31266387 |
Mihail Zilbermint1,2,3,4, Amadou Gaye5, Annabel Berthon1, Fady Hannah-Shmouni1, Fabio R Faucz1, Maya B Lodish1, Adam R Davis6, Gary H Gibbons5,7, Constantine A Stratakis1.
Abstract
Background We recently found that ARMC 5 variants may be associated with primary aldosteronism in blacks. We investigated a cohort from the MH - GRID (Minority Health Genomics and Translational Research Bio-Repository Database) and tested the association between ARMC 5 variants and blood pressure in black s. Methods and Results Whole exome sequencing data of 1377 black s were analyzed. Target single-variant and gene-based association analyses of hypertension were performed for ARMC 5, and replicated in a subset of 3015 individuals of African descent from the UK Biobank cohort. Sixteen rare variants were significantly associated with hypertension ( P=0.0402) in the gene-based (optimized sequenced kernel association test) analysis; the 16 and one other, rs116201073, together, showed a strong association ( P=0.0003) with blood pressure in this data set. The presence of the rs116201073 variant was associated with lower blood pressure. We then used human embryonic kidney 293 and adrenocortical H295R cells transfected with an ARMC 5 construct containing rs116201073 (c.*920T>C). The latter was common in both the discovery ( MH - GRID ) and replication ( UK Biobank) data and reached statistical significance ( P=0.044 [odds ratio, 0.7] and P=0.007 [odds ratio, 0.76], respectively). The allele carrying rs116201073 increased levels of ARMC5 mRNA , consistent with its protective effect in the epidemiological data. Conclusions ARMC 5 shows an association with hypertension in black s when rare variants within the gene are considered. We also identified a protective variant of the ARMC 5 gene with an effect on ARMC 5 expression confirmed in vitro. These results extend our previous report of ARMC 5's possible involvement in the determination of blood pressure in blacks.Entities:
Keywords: ARMC5; Conn syndrome; adrenocortical adenoma; black; genetics; hypertension; primary aldosteronism
Mesh:
Substances:
Year: 2019 PMID: 31266387 PMCID: PMC6662143 DOI: 10.1161/JAHA.119.012508
Source DB: PubMed Journal: J Am Heart Assoc ISSN: 2047-9980 Impact factor: 5.501
Baseline Characteristics of Patients From the MH‐GRID Study
| Characteristics | Cases (n=623) | Controls (n=754) |
|
|---|---|---|---|
| Age, y | 48.25±6.06 | 43.35±7.23 | 1.17×10−40 |
| Sex | |||
| Women, % | 57.11 | 67.18 | 1.10×10−4 |
| Men, % | 42.89 | 32.82 | |
| Current smoker (no/yes) | 451/165 | 449/302 | 2.59×10−7 |
| BMI, kg/m2 | 33.92±7.5 | 28.8±7.46 | 1.25×10−34 |
| SBP | 140±16 | 109±7 | <2.2×10−16 |
| DBP | 89±10 | 70±7 | <2.2×10−16 |
| HDL, mg/dL | 53.28±15.18 | 55.42±16.55 | 1.45×10−2 |
| LDL, mg/dL | 120.01±34.57 | 112.32±34.19 | 5.81×10−5 |
| Triglycerides, mg/dL | 106.95±57.04 | 87.01±52.24 | 8.10×10−11 |
BMI indicates body mass index; DBP, diastolic blood pressure; HDL, high‐density lipoprotein; LDL, low‐density lipoprotein; MH‐GRID, Minority Health Genomics and Translational Research Bio‐Repository Database; SBP, systolic blood pressure.
Single‐Variant Analysis Results and Details of the SNPs
| Variant | MH‐GRID Study | UK Biobank | ||
|---|---|---|---|---|
|
|
|
|
| |
| Position on chromosome 16 | 31477442 | 31477460 | 31476458 | 31477442 |
| Alleles (minor/major) | Cytosine/thymine | Adenine/guanine | Thymine/cytosine | Cytosine/thymine |
| MAF | 0.071 | 0.182 | 0.096 | 0.077 |
| OR | 0.7 | 1.21 | 1.08 | 0.76 |
| SD | 0.18 | 0.11 | 0.14 | 0.1 |
|
| 0.044 | 0.089 | 0.580 | 0.0068 |
| Frequency in cases, % | 5.50 | 18.70 | 10.10 | 7.61 |
| Frequency in controls, % | 8.20 | 16.90 | 9.50 | 8.85 |
| Functional information | Synonymous | Synonymous | Missense | Synonymous |
MAF indicates minor allele frequency; MH‐GRID, Minority Health Genomics and Translational Research Bio‐Repository Database; OR, odds ratio; SNP, single nucleotide polymorphism.
SKAT‐O Gene‐Based Analysis Results
| Variant |
| No. of Variants Collapsed |
|---|---|---|
| Rare variants | 0.0011 | 16 |
| Rare variants+ | 0.0003 | 17 |
SKAT‐O indicates optimized sequence kernel association test.
List of the Set of 17 Variants Significantly Associated With Hypertension and MAF in the MH‐GRID Study
| Variant | POS (GRCh37) | MAF | Functional Information (dbSNP) | Under Selection (GERP/SiPhy) |
|---|---|---|---|---|
| 16:31473335 | 31473335 | 0.0004 | ||
| 16:31473823 | 31473823 | 0.0004 | ||
|
| 31474091 | 0.0004 | Missense (glutamine ⇒ arginine) | Yes |
| 16:31474095 | 31474095 | 0.0007 | ||
|
| 31476361 | 0.0004 | Missense (glycine ⇒ cysteine) | No |
|
| 31477234 | 0.0004 | Missense (threonine ⇒ methionine) | |
| 16:31477236 | 31477236 | 0.0004 | ||
|
| 31477442 | 0.0711 | Synonymous | Yes |
| 16:31477452 | 31477452 | 0.0004 | ||
| 16:31477486 | 31477486 | 0.0004 | ||
| 16:31477569 | 31477569 | 0.0004 | ||
| 16:31477574 | 31477574 | 0.0004 | ||
|
| 31477834 | 0.0004 | Missense (arginine ⇒ glutamine) | Yes |
|
| 31477859 | 0.0004 | Synonymous | |
|
| 31477945 | 0.0004 | Missense (glutamic acid ⇒ valine) | |
| 16:31478013 | 31478013 | 0.0004 | ||
|
| 31478192 | 0.0004 | Synonymous | Yes |
MAF indicates minor allele frequency; MH‐GRID, Minority Health Genomics and Translational Research Bio‐Repository Database; POS, position; GRCh37, Genome Reference Consortium Human Build 37; dbSNP, The Single Nucleotide Polymorphism Database; GERP, Genomic Evolutionary Rate Profiling; SiPhy, SIte‐specific PHYlogenetic analysis.
Figure 1Number of mutant alleles by cases and controls across the Minority Health Genomics and Translational Research Bio‐Repository Database. sHTN indicates severe hypertension.
Figure 2Comparison of wild‐type (WT) and mutant (rs116201073) expression in human embryonic kidney 293 (HEK293) cell line. A and B, Real‐time quantitative polymerase chain reaction (RTqPCR) using primers recognizing all isoforms (A) or only the ARMC5‐203 isoform (B) on HEK293 cells transfected with WT or mutant (variant‐carrying) ARMC5‐203 plasmid for 24 and 48 hours. C, The ratio of the mutant and the WT ARMC5‐203 expression detected by RTqPCR on HEK293 cells untreated or treated 1, 2, or 3 hours with a translation blocker, cycloheximide. The graph represents the means of at least 3 independent experiments±standard error of the mean (SEM).