Literature DB >> 31263737

Design and fabrication of heterogeneous lung nodule phantoms for assessing the accuracy and variability of measured texture radiomics features in CT.

Ehsan Samei1,2,3,4,5,6,7, Jocelyn Hoye1,2,3, Yuese Zheng1,2,5, Justin B Solomon1,2,3,4, Daniele Marin2.   

Abstract

We aimed to design and fabricate synthetic lung nodules with patient-informed internal heterogeneity to assess the variability and accuracy of measured texture features in CT. To that end, 190 lung nodules from a publicly available database of chest CT images (Lung Image Database Consortium) were selected based on size ( > 3    mm ) and malignancy. The texture features of the nodules were used to train a statistical texture synthesis model based on clustered lumpy background. The model parameters were ascertained based on a genetic optimization of a Mahalanobis distance objective function. The resulting texture model defined internal heterogeneity within 24 anthropomorphic lesion models which were subsequently fabricated into physical phantoms using a multimaterial three-dimensional (3-D) printer. The 3-D-printed lesions were imbedded in an anthropomorphic chest phantom and imaged with a clinical scanner using different acquisition parameters including slice thickness, dose level, and reconstruction kernel. The imaged lesions were analyzed in terms of texture features to ascertain the impact of CT imaging on lesion texture quantification. The texture modeling method produced lesion models with low and stable Mahalanobis distance between real and synthetic textures. The virtual lesions were successfully printed into 3-D phantoms. The accuracy and variability of the measured features extracted from the CT images of the phantoms showed notable influence from the imaging acquisition parameters with contrast, energy, and texture entropy exhibiting most sensitivity in terms of accuracy, and contrast, dissimilarity, and texture entropy most variability. Thinner slice thicknesses yielded more accurate and edge reconstruction kernels more stable results. We conclude that printed textured models of lesions can be developed using a method that can target and minimize the mathematical distance between real and synthetic lesions. The synthetic lesions can be used as the basis to investigate how CT imaging conditions might affect radiomics features derived from CT images.

Entities:  

Keywords:  3-D printing; genetic algorithm; heterogeneous lesions; imaging physics; lung lesions; radiomics; texture features

Year:  2019        PMID: 31263737      PMCID: PMC6586987          DOI: 10.1117/1.JMI.6.2.021606

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  18 in total

1.  Statistical texture synthesis of mammographic images with super-blob lumpy backgrounds.

Authors:  F Bochud; C Abbey; M Eckstein
Journal:  Opt Express       Date:  1999-01-04       Impact factor: 3.894

2.  A study on using texture analysis methods for identifying lobar fissure regions in isotropic CT images.

Authors:  Q Wei; Y Hu
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

3.  Tumor heterogeneity and permeability as measured on the CT component of PET/CT predict survival in patients with non-small cell lung cancer.

Authors:  Thida Win; Kenneth A Miles; Sam M Janes; Balaji Ganeshan; Manu Shastry; Raymondo Endozo; Marie Meagher; Robert I Shortman; Simon Wan; Irfan Kayani; Peter J Ell; Ashley M Groves
Journal:  Clin Cancer Res       Date:  2013-05-09       Impact factor: 12.531

4.  Quantum noise properties of CT images with anatomical textured backgrounds across reconstruction algorithms: FBP and SAFIRE.

Authors:  Justin Solomon; Ehsan Samei
Journal:  Med Phys       Date:  2014-09       Impact factor: 4.071

Review 5.  Radiomics: the process and the challenges.

Authors:  Virendra Kumar; Yuhua Gu; Satrajit Basu; Anders Berglund; Steven A Eschrich; Matthew B Schabath; Kenneth Forster; Hugo J W L Aerts; Andre Dekker; David Fenstermacher; Dmitry B Goldgof; Lawrence O Hall; Philippe Lambin; Yoganand Balagurunathan; Robert A Gatenby; Robert J Gillies
Journal:  Magn Reson Imaging       Date:  2012-08-13       Impact factor: 2.546

6.  Exploring Variability in CT Characterization of Tumors: A Preliminary Phantom Study.

Authors:  Binsheng Zhao; Yongqiang Tan; Wei Yann Tsai; Lawrence H Schwartz; Lin Lu
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

7.  Texture analysis of non-small cell lung cancer on unenhanced computed tomography: initial evidence for a relationship with tumour glucose metabolism and stage.

Authors:  Balaji Ganeshan; Sandra Abaleke; Rupert C D Young; Christopher R Chatwin; Kenneth A Miles
Journal:  Cancer Imaging       Date:  2010-07-06       Impact factor: 3.909

8.  Mammographic texture synthesis: second-generation clustered lumpy backgrounds using a genetic algorithm.

Authors:  Cyril Castella; Karen Kinkel; François Descombes; Miguel P Eckstein; Pierre-Edouard Sottas; Francis R Verdun; François O Bochud
Journal:  Opt Express       Date:  2008-05-26       Impact factor: 3.894

9.  Assessment of tumor heterogeneity: an emerging imaging tool for clinical practice?

Authors:  Fergus Davnall; Connie S P Yip; Gunnar Ljungqvist; Mariyah Selmi; Francesca Ng; Bal Sanghera; Balaji Ganeshan; Kenneth A Miles; Gary J Cook; Vicky Goh
Journal:  Insights Imaging       Date:  2012-10-24

10.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

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  4 in total

1.  Systematic analysis of bias and variability of texture measurements in computed tomography.

Authors:  Marthony Robins; Justin Solomon; Jocelyn Hoye; Ehsan Abadi; Daniele Marin; Ehsan Samei
Journal:  J Med Imaging (Bellingham)       Date:  2019-07-12

2.  Repeatability and reproducibility study of radiomic features on a phantom and human cohort.

Authors:  A K Jha; S Mithun; V Jaiswar; U B Sherkhane; N C Purandare; K Prabhash; V Rangarajan; A Dekker; L Wee; A Traverso
Journal:  Sci Rep       Date:  2021-01-21       Impact factor: 4.379

Review 3.  Understanding Sources of Variation to Improve the Reproducibility of Radiomics.

Authors:  Binsheng Zhao
Journal:  Front Oncol       Date:  2021-03-29       Impact factor: 6.244

4.  Quality control of radiomic features using 3D-printed CT phantoms.

Authors:  Usman Mahmood; Aditya Apte; Christopher Kanan; David D B Bates; Giuseppe Corrias; Lorenzo Manneli; Jung Hun Oh; Yusuf Emre Erdi; John Nguyen; Joseph O'Deasy; Amita Shukla-Dave
Journal:  J Med Imaging (Bellingham)       Date:  2021-06-29
  4 in total

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