| Literature DB >> 31263319 |
Peter Bock1, Notburga Gierlinger1.
Abstract
Anatomical and chemical information can be linked by Raman imaging. Behind every pixel of the image is a Raman spectrum, which contains all the information as a molecular fingerprint. Yet to understand the spectra, the bands have to be assigned to components and their molecular structures. Although the lignin distribution is easily tracked in plant tissues, the assignment of the spectra is not good enough to allow in-depth analysis of the composition. Assignments of three lignin model compounds were derived from polarization measurements and quantum-chemical computations. Raman spectra of coniferyl alcohol crystals showed orientation dependence, which helped in band assignment. Abietin showed a Raman spectrum that was very similar to the spectrum of coniferyl alcohol, whereas its IR spectrum was very different due to bands of the sugar moiety. The Raman spectrum of coniferyl aldehyde is affected by the crystal order of molecules. All three compounds show much stronger band intensities than unconjugated single aromatic rings, indicating that the bulk of the lignin structure has significantly reduced contribution to Raman band intensities. Therefore, it is possible to highlight certain structures of lignin with Raman spectroscopy, because low amounts of a compound do not necessarily mean weak features in the spectrum.Entities:
Keywords: abietin; band assignment; coniferyl alcohol; coniferyl aldehyde; lignin
Year: 2019 PMID: 31263319 PMCID: PMC6602882 DOI: 10.1002/jrs.5588
Source DB: PubMed Journal: J Raman Spectrosc ISSN: 0377-0486 Impact factor: 3.133
Figure 2Raman and Infrared spectra of coniferyl alcohol. The Raman spectra shown here are the ones from Figure 1. The orange arrows indicate the laser polarization and show the approximate orientation of the molecules to the laser. The letters X, Y, and Z refer to the cardinal directions of Figure 1. Infrared spectra were obtained from crystalline material and from thin films after ethanol evaporation. Several bands change in intensity, notable being aromatic bands (1,275 and 757 cm−1) [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 3Raman and infrared (IR) spectra of abietin, coniferyl alcohol, and glucose. The latter represent the aromatic and the sugar part of abietin. It is apparent that the Raman spectrum mainly represents the aromatic part. Only the broad saturated C―H stretch (3,000–2,800 cm−1) indicates the presence of glucose. In comparison, the IR spectrum of abietin shows a typical band complex of carbohydrates (1,200–900 cm−1) beside strong aromatic bands (1,515, 1,254, and 1,226 cm−1). It is therefore much easier to deduce the presence of glucose in IR than in Raman [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 4Raman and Infrared (IR) spectra of coniferyl aldehyde and vanillylidenacetone. The latter is shown for comparison to highlight aldehyde‐specific Raman bands (1,401 and 1,132 cm−1). The spectrum named KR was obtained from a crystal, AM represents an amorphous phase (cooled down after melting). The IR spectra of coniferyl aldehyde are shown for the mixture of amorphous phase with crystalline phase (AM + KR, compound as received). Band splitting is removed in the spectrum of the cooled melt (AM). The IR spectra of the aldehyde show typical Bohlmann bands (dashed line). Aldehyde and ketone are much harder to distinguish in IR than in Raman [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 5Raman spectra of a cell corner of spruce, of all three compounds discussed herein and of 2‐methoxy‐4‐methylphenol. The latter serves as a model compound for the lignin polymer (G ring). The left part of the figure shows spectra excited by 532 nm and the right part spectra of 785 nm. Spectra of coniferyl alcohol, aldehyde, and abietin are very similar to the lignin spectrum in the cell corner, regardless of the excitation wavelength. On the other hand, the strongest bands of the “single G ring” (Φ1, Φ12) are very weak in the cell corner spectrum (red arrows). This means that the cell corner spectrum mainly shows conjugated aromatic substructures (compare Φ8), whereas unconjugated rings, although in majority, can hardly be seen in the Raman spectrum. Note that the “single G ring” is also drawn in the cell corner spectrum [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 1A Raman image of several coniferyl alcohol crystals with laser polarization 0° (A), followed by another one at 90° recorded at the same position (not shown). The spectrometer recorded radiation from any polarization direction. Spectra of the same position differed between the two images; spectra of two pixels—indicated by yellow squares in (A)—are shown in (D) and (F). The difference was attributed to molecular orientation. Although the orientation relative to the laser cannot be estimated exactly—indicated in (B)—the overall molecular orientation can be deduced from the spectra. In (D), one spectrum shows a very strong C=C stretch, whereas the other shows a strong C―H stretch of ring and C=C. If the laser is parallel to the C=C bond, it will give the strongest signal. If the laser is orthogonal to it, the alkene's and one of the ring's C―H bonds are still sufficiently parallel to the laser to give signal. Band assignments support this observation. Similarly, spectra in (F) can be explained by the methoxy group's out‐of‐plane hydrogens and the C=C stretch. On the basis of this, assumed orientations are drawn in (E) and (G). This also suggests that the molecules are rather ordered in the crystal; otherwise, spectra would average out. Combinations of mainly orientation Y and Z were also found but are not shown [Colour figure can be viewed at wileyonlinelibrary.com]
Selected bands of the studied compounds compared with a lignin spectrum obtained from cell corners of spruce (at 532 nm). Assignments of established work as well as this work are given. Coniferyl alcohol which is bound to the lignin structure over the aryl O. This is derived from the spectrum of abietin [Colour table can be viewed at wileyonlinelibrary.com]
| Coniferyl alcohol | Abietin | Coniferyl aldehyd | Spruce cell corner | Literature | This work |
|---|---|---|---|---|---|
| 3,065 | 3,079 | 3,075 | Aromatic C―H stretch | C―H stretch of ring Φ2 | |
| 3,000 | 3,013 | 3,009 | C―H stretch in OCH3, asymmetric | C―H stretch of C=C | |
| 2,944 | 2,941 | 2,941 | C―H stretch in OCH3, asymmetric | C―H stretch of OCH3, asymmetric | |
| 2,864 | 2,876 | 2,849 | C―H stretch in R3C‐H | Aliphatic C―H stretch | |
| 1,661 | 1,653 | 1,670 | 1,658 | Ring conj. C=C stretch of Coniferyl alcohol; C=O stretch of coniferaldehyde |
C=C stretch of Coniferyl alcohol, |
| 1,623 | 1,620 | Ring conj. C=C stretch of coniferaldehyde | C=C stretch of Coniferyl aldehyde | ||
| 1,607 | 1,606 | 1,601 | 1,598 | Aryl ring stretching, symmetric | C=C stretch of ring Φ8b |
| 1,515 | 1,516 | 1,507 | Aryl ring stretching, asymmetric | C=C stretch of ring Φ19b | |
| 1456 | 1,455 | 1,458 | 1,454 | O―CH3 deformation; CH2 scissoring; guaiacyl ring vibration | CH bending of OCH3 and CH2 |
| 1,435 | 1,429 | O―CH3 deformation; CH2 scissoring; guaiacyl ring vibration |
CH bending of OCH3 and CH2; | ||
| 1,397 | 1,393 | Phenolic O―H bend | C―H bend of Coniferyl aldehyde | ||
| 1,324 | 1,322 | C―H bend of ‐O‐4 Coniferyl alcohola | |||
| 1,298 | 1,299 | 1,298 | Aryl‐O of aryl‐OH and aryl‐O‐CH3; C=C stretch of Coniferyl alcohol | C―H bend of C=C of Coniferyl alcohol | |
| 1,290 | C―H bend of C=C of Coniferyl aldehyde | ||||
| 1,281 | 1,273 | Aryl‐O of aryl‐OH and aryl‐O‐CH3; guaiacyl ring (with C=O group) mode |
C―H bend of C=C; | ||
| 1,222 | 1,227 | 1,225 | Aryl‐O of aryl‐OH and aryl‐O‐CH3; guaiacyl ring (with C=O group) mode |
C=C bend of ring Φ13; | |
| 1,196 | 1,197 | 1,213 | 1,194 | A phenol mode | Aryl‐O‐H bend, CH3 rocking |
| 1,131 | 1,131 | 1,139 | A mode of coniferaldehyde | C―C stretch of Coniferyl aldehyde | |
| 811 | 804 | 813 | 809 | Skeletal deformation of aromatic rings, substituent groups, and side chains | C=C stretch of ring Φ1 |
| 584 | 596 | Skeletal deformation of aromatic rings, substituent groups, and side chains | Ring/C=O bend of Coniferyl aldehyde | ||
| 382 | 379 | Skeletal deformation of aromatic rings, substituent groups, and side chains | C―O―CH3 bending? |