| Literature DB >> 32214622 |
Peter Bock1, Paula Nousiainen2, Thomas Elder3, Markus Blaukopf4, Hassan Amer5,6, Ronald Zirbs7, Antje Potthast5, Notburga Gierlinger1.
Abstract
Vibrational spectroscopy is a very suitable tool for investigating the plant cell wall in situ with almost no sample preparation. The structural information of all different constituents is contained in a single spectrum. Interpretation therefore heavily relies on reference spectra and understanding of the vibrational behavior of the components under study. For the first time, we show infrared (IR) and Raman spectra of dibenzodioxocin (DBDO), an important lignin substructure. A detailed vibrational assignment of the molecule, based on quantum chemical computations, is given in the Supporting Information; the main results are found in the paper. Furthermore, we show IR and Raman spectra of synthetic guaiacyl lignin (dehydrogenation polymer-G-DHP). Raman spectra of DBDO and G-DHP both differ with respect to the excitation wavelength and therefore reveal different features of the substructure/polymer. This study confirms the idea previously put forward that Raman at 532 nm selectively probes end groups of lignin, whereas Raman at 785 nm and IR seem to represent the majority of lignin substructures.Entities:
Keywords: FT‐IR; Raman spectroscopy; dehydrogenation; dibenzodioxocin; lignin; polymer
Year: 2020 PMID: 32214622 PMCID: PMC7079546 DOI: 10.1002/jrs.5808
Source DB: PubMed Journal: J Raman Spectrosc ISSN: 0377-0486 Impact factor: 2.727
Figure 1(a) Lowest energy conformer of DBDO after 1,000 steps of a Monte Carlo search performed with MMFF minimization. The arrow points to a hydrogen bond. (b) Chemical structure of DBDO. (c) Dihedral angle of the biphenyl unit [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 2Infrared and Raman spectra of DBDO. The shape of Raman spectra differs between the excitation wavelengths. This relates to resonance enhancement, which is only created at 532 nm. Calculated, unscaled spectra are also shown [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 3Raman and IR spectra of G‐DHP (dehydrogenation polymer) and DBDO. The region from 3,700 to 2,700 cm−1 has been scaled up to aid visibility. Assignments are given for the DHP. In the chemical structure of DBDO, different types of linkages are highlighted. The shaded area informs on how OH modes add to the spectrum; the shape was derived from the IR spectrum of water. G, G‐ring [Colour figure can be viewed at http://wileyonlinelibrary.com]
Overview of the IR band assignments of G‐lignin. Note that Hergert studied milled wood lignins and Faix studied Western hemlock native lignin. Both authors gave assignments for lignin in general, whereas our assignment work is based on G‐DHP. Φ = Ring mode in Wilson/Varsanyi notation. Two charts depicting all ring modes for asym‐trisubstituted and asym‐tetrasubstituted rings can be found in the Supporting Information
| Wavenumber (G‐DHP) | Hergert | Faix | This work |
|---|---|---|---|
| ~3,400 | O–H stretching (H‐bonded) | O–H stretch | O–H stretch (H‐bonded) |
| 3,086 | C–H stretch of aromatic ring | ||
| 3,065 | C–H stretch of aromatic ring Φ2 | ||
| 3,035 | C–H stretch of aromatic ring | ||
| 3,002 | C–H stretch in methyl and methylene groups | C–H stretch of OCH3 | |
| 2,960 | C–H stretch in methyl and methylene groups | Asymmetric C–H stretch of OCH3 | |
| 2,937 | C–H stretching (methoxyl groups and side‐chain CH) (Assigned to 2,920 in original publication) | C–H stretch in methyl and methylene groups |
Symmetric C–H stretch of OCH3 Antisymmetric stretch of CH2OH |
| 2,875 | C–H stretching (methoxyl groups and side‐chain CH) | C–H stretch in methyl and methylene groups | Symmetric C–H stretch of CH2OH |
| 2,844 | C–H stretch in methyl and methylene groups | Symmetric C–H stretch of OCH3 | |
| 1,720 | C=O stretching of aliphatic ketone | C=O stretch in unconjugated ketone, carbonyl, and in ester groups (frequently of carbohydrate origin); conjugated aldehydes and carboxylic acids absorb around and below 1,700 cm−1 | C=O stretch of unconjugated carbonyls |
| 1,660 | C=O stretching of p‐substituted aryl ketone | C=O stretch; in conjugated p‐subst. aryl ketones; strong electronegative substituents lower the wavenumber |
C=O stretch of conjugated carbonyls (i.e., coniferyl aldehyde, carbonyls in α‐position, carbonyls of quinone methide) C=C stretching of coniferyl alcohol |
| 1,599 | C=C skeletal vibrations (aromatic ring) | Aromatic skeletal vibrations plus C=O stretch; S > G; G condensed > G etherified | Ring stretch Φ8b of G‐rings and Φ8a of S‐rings |
| 1,507 | C=C skeletal vibrations (aromatic ring) | Aromatic skeletal vibrations; G > S | Ring stretch Φ19b of G‐rings and Φ19a of S‐rings |
| 1,463 | C–H deformation (asymmetric) | C–H deformations; asym. In –CH3 and –CH2– | C–H bending of OCH3 and CH2 |
| 1,455 | C–H deformations; asym. In –CH3 and –CH2– | C–H bending of OCH3 and CH2 | |
| 1,423 | Aromatic skeletal vibrations combined with C–H in‐plane deform. | Ring stretch Φ19a of G‐rings and Φ19b of S‐ringsa | |
| 1,369 | C–H deformation (symmetric) | Aliphatic C–H stretch in CH3; not in OMe; phen. OH |
Ring stretch Φ14 of 4‐OH‐G‐rings and S‐rings Ring stretch Φ20a of 5‐5′ structures |
| 1,330 | S‐ring plus G‐ring condensed (i.e., G‐ring substituted in pos. 5) | Ring stretch Φ20a of asymmetric‐tetrasubstituted rings (C–X; X=C, O) | |
| 1,268 | C–O stretching aromatic (methoxyl) | G‐ring plus C=O stretch; G condensed > G etherified | Ring bend Φ7a of G‐rings |
| 1,213 | C–O stretching aromatic (phenol) | C–C plus C–O plus C=O stretch; G condensed > G etherified (authors give range from 1,221 to 1,230) | Ring bend Φ13 of G‐rings |
| 1,190 | Unassigned (methoxyl group) | C–H rocking of methoxy groups | |
| 1,141 | Aromatic C–H in‐plane deformation; typical for G‐units; whereby G condensed > etherified (typical for S‐units): plus secondary alcohols plus C=O stretch |
C–C stretch of coniferyl aldehyde C–H bend Φ18b, Φ15 of G‐rings CH bend Φ18a of 5‐5′ structures | |
| 1,087 | C–O deformation (aliphatic ether or secondary hydroxyl) | C–O deformation in secondary alcohols and aliphatic ethers |
C–C stretch of Cß and Cγ C–O stretch of methoxy groups of 5‐5′ structures |
| 1,031 | C–O deformation (methoxyl group) | Aromatic C–H in‐plane deformation, G > S; plus C–O deform. In primary alcohols; plus C=O stretch (unconj.) | C–O stretch of methoxy groups of G‐rings |
| 967 | =CH out‐of‐plane deformation (trans) | –HC=CH– out‐of‐plane deform (trans) |
C–H wagging of C=C of coniferyl aldehyde and alcohol In‐phase ring bend Φ7a of 5‐5′ structures |
| 930 | Unassigned (possibly OH out‐of‐plane deformation) | C–H out‐of‐plane; aromatic (authors give range from 915 to 925) | Ring bend Φ7b of G‐rings |
| 855 | C–H out‐of‐plane deformation (one H, aromatic ring) | C–H out‐of‐plane in positions 2, 5, and 6 of G‐units | C–H out‐of‐plane bend Φ10a of G‐rings |
| 820 | C–H out‐of‐plane deformation (two H, aromatic ring) | C–H out‐of‐plane in positions 2, 5, and 6 of G‐units | C–H out‐of‐plane bend Φ11 of G‐rings |
| 775 | Ring bend Φ12 of G‐rings |
Includes G‐units with substituents on ring position 5.