Literature DB >> 31240511

Using machine learning to characterize heart failure across the scales.

M Peirlinck1, F Sahli Costabal2, K L Sack3,4, J S Choy5, G S Kassab5, J M Guccione4, M De Beule1, P Segers1, E Kuhl6.   

Abstract

Heart failure is a progressive chronic condition in which the heart undergoes detrimental changes in structure and function across multiple scales in time and space. Multiscale models of cardiac growth can provide a patient-specific window into the progression of heart failure and guide personalized treatment planning. Yet, the predictive potential of cardiac growth models remains poorly understood. Here, we quantify predictive power of a stretch-driven growth model using a chronic porcine heart failure model, subject-specific multiscale simulation, and machine learning techniques. We combine hierarchical modeling, Bayesian inference, and Gaussian process regression to quantify the uncertainty of our experimental measurements during an 8-week long study of volume overload in six pigs. We then propagate the experimental uncertainties from the organ scale through our computational growth model and quantify the agreement between experimentally measured and computationally predicted alterations on the cellular scale. Our study suggests that stretch is the major stimulus for myocyte lengthening and demonstrates that a stretch-driven growth model alone can explain [Formula: see text] of the observed changes in myocyte morphology. We anticipate that our approach will allow us to design, calibrate, and validate a new generation of multiscale cardiac growth models to explore the interplay of various subcellular-, cellular-, and organ-level contributors to heart failure. Using machine learning in heart failure research has the potential to combine information from different sources, subjects, and scales to provide a more holistic picture of the failing heart and point toward new treatment strategies.

Entities:  

Keywords:  Bayesian inference; Gaussian process regression; Growth and remodeling; Heart failure; Machine learning; Multiscale; Uncertainty quantification

Mesh:

Year:  2019        PMID: 31240511     DOI: 10.1007/s10237-019-01190-w

Source DB:  PubMed          Journal:  Biomech Model Mechanobiol        ISSN: 1617-7940


  18 in total

1.  Bayesian calibration of a computational model of tissue expansion based on a porcine animal model.

Authors:  Tianhong Han; Taeksang Lee; Joanna Ledwon; Elbert Vaca; Sergey Turin; Aaron Kearney; Arun K Gosain; Adrian B Tepole
Journal:  Acta Biomater       Date:  2021-10-08       Impact factor: 8.947

2.  Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle.

Authors:  Agnieszka Borowska; Hao Gao; Alan Lazarus; Dirk Husmeier
Journal:  Int J Numer Method Biomed Eng       Date:  2022-04-07       Impact factor: 2.648

Review 3.  Multiscale simulations of left ventricular growth and remodeling.

Authors:  Hossein Sharifi; Charles K Mann; Alexus L Rockward; Mohammad Mehri; Joy Mojumder; Lik-Chuan Lee; Kenneth S Campbell; Jonathan F Wenk
Journal:  Biophys Rev       Date:  2021-08-25

4.  Propagation of uncertainty in the mechanical and biological response of growing tissues using multi-fidelity Gaussian process regression.

Authors:  Taeksang Lee; Ilias Bilionis; Adrian Buganza Tepole
Journal:  Comput Methods Appl Mech Eng       Date:  2019-12-09       Impact factor: 6.756

Review 5.  Computational models of cardiac hypertrophy.

Authors:  Kyoko Yoshida; Jeffrey W Holmes
Journal:  Prog Biophys Mol Biol       Date:  2020-07-21       Impact factor: 3.667

6.  Multiscale modeling meets machine learning: What can we learn?

Authors:  Grace C Y Peng; Mark Alber; Adrian Buganza Tepole; William R Cannon; Suvranu De; Salvador Dura-Bernal; Krishna Garikipati; George Karniadakis; William W Lytton; Paris Perdikaris; Linda Petzold; Ellen Kuhl
Journal:  Arch Comput Methods Eng       Date:  2020-02-17       Impact factor: 7.302

7.  Improving reconstructive surgery design using Gaussian process surrogates to capture material behavior uncertainty.

Authors:  Casey Stowers; Taeksang Lee; Ilias Bilionis; Arun K Gosain; Adrian Buganza Tepole
Journal:  J Mech Behav Biomed Mater       Date:  2021-02-09

Review 8.  Computational modeling of cardiac growth and remodeling in pressure overloaded hearts-Linking microstructure to organ phenotype.

Authors:  Justyna A Niestrawska; Christoph M Augustin; Gernot Plank
Journal:  Acta Biomater       Date:  2020-02-11       Impact factor: 8.947

9.  The reproduction number of COVID-19 and its correlation with public health interventions.

Authors:  Kevin Linka; Mathias Peirlinck; Ellen Kuhl
Journal:  medRxiv       Date:  2020-07-07

10.  The reproduction number of COVID-19 and its correlation with public health interventions.

Authors:  Kevin Linka; Mathias Peirlinck; Ellen Kuhl
Journal:  Comput Mech       Date:  2020-07-28       Impact factor: 4.014

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