Literature DB >> 32863456

Propagation of uncertainty in the mechanical and biological response of growing tissues using multi-fidelity Gaussian process regression.

Taeksang Lee1, Ilias Bilionis1, Adrian Buganza Tepole1,2.   

Abstract

A key feature of living tissues is their capacity to remodel and grow in response to environmental cues. Within continuum mechanics, this process can be captured with the multiplicative split of the deformation gradient into growth and elastic contributions. The mechanical and biological response during tissue adaptation is characterized by inherent variability. Accounting for this uncertainty is critical to better understand tissue mechanobiology, and, moreover, it is of practical importance if we aim to develop predictive models for clinical use. However, the current gold standard in computational models of growth and remodeling remains the use of deterministic finite element (FE) simulations. Here we focus on tissue expansion, a popular technique in which skin is stretched by a balloon-like device inducing its growth. We construct FE models of tissue expansion with various levels of detail, and show that a sufficiently broad set of FE simulations from these models can be used to train an accurate and efficient multi-fidelity Gaussian process (GP) surrogate. The approach is not limited to simulation data, rather, it can fuse different kinds of data, including from experiments. The main appeal of the framework relies on the common experience that highly detailed models (or experiments) are more accurate but also more costly, while simpler models (or experiments) can be easily evaluated but are bound to have some error. In these situations, doing uncertainty analysis tasks with the high fidelity models alone is not feasible and, conversely, relying solely on low fidelity approximations is also undesirable. We show that a multi-fidelity GP outperforms the high fidelity GP and low fidelity GP when tested against the most detailed FE model. In turn, having trained the multi-fidelity GP model, we showcase the propagation of uncertainty from the mechanical and biological response parameters to the spatio-temporal growth outcomes. We expect that the methods and applications in this paper will enable future research in parameter calibration under uncertainty and uncertainty propagation in real clinical scenarios involving tissue growth and remodeling.

Entities:  

Keywords:  Machine learning; Skin mechanics; Tissue expansion; Tissue mechanics; Uncertainty analysis

Year:  2019        PMID: 32863456      PMCID: PMC7453758          DOI: 10.1016/j.cma.2019.112724

Source DB:  PubMed          Journal:  Comput Methods Appl Mech Eng        ISSN: 0045-7825            Impact factor:   6.756


  52 in total

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Journal:  Ann Biomed Eng       Date:  2012-03-17       Impact factor: 3.934

2.  Bayesian calibration of hyperelastic constitutive models of soft tissue.

Authors:  Sandeep Madireddy; Bhargava Sista; Kumar Vemaganti
Journal:  J Mech Behav Biomed Mater       Date:  2015-12-19

3.  Age-related changes in skin mechanical properties: a quantitative evaluation of 120 female subjects.

Authors:  Nils Krueger; Stefanie Luebberding; Mareike Oltmer; Meike Streker; Martina Kerscher
Journal:  Skin Res Technol       Date:  2011-02-01       Impact factor: 2.365

4.  Model inversion via multi-fidelity Bayesian optimization: a new paradigm for parameter estimation in haemodynamics, and beyond.

Authors:  Paris Perdikaris; George Em Karniadakis
Journal:  J R Soc Interface       Date:  2016-05       Impact factor: 4.118

5.  Age-related changes in the mechanical properties of human skin.

Authors:  C H Daly; G F Odland
Journal:  J Invest Dermatol       Date:  1979-07       Impact factor: 8.551

6.  Location-specific mechanical response and morphology of facial soft tissues.

Authors:  Marco Pensalfini; Johannes Weickenmeier; Marga Rominger; Roberto Santoprete; Oliver Distler; Edoardo Mazza
Journal:  J Mech Behav Biomed Mater       Date:  2017-11-14

7.  Stress-dependent finite growth in soft elastic tissues.

Authors:  E K Rodriguez; A Hoger; A D McCulloch
Journal:  J Biomech       Date:  1994-04       Impact factor: 2.712

8.  Breast reconstruction after mastectomy using the temporary expander.

Authors:  C Radovan
Journal:  Plast Reconstr Surg       Date:  1982-02       Impact factor: 4.730

Review 9.  Systems biology and mechanics of growth.

Authors:  Mona Eskandari; Ellen Kuhl
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-09-09

Review 10.  Reconstructive considerations in the surgical management of melanoma.

Authors:  John A van Aalst; Terry McCurry; Jeffrey Wagner
Journal:  Surg Clin North Am       Date:  2003-02       Impact factor: 2.741

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  6 in total

1.  Multiscale mechanobiology: Coupling models of adhesion kinetics and nonlinear tissue mechanics.

Authors:  Yifan Guo; Sarah Calve; Adrian Buganza Tepole
Journal:  Biophys J       Date:  2022-01-21       Impact factor: 4.033

2.  Bayesian calibration of a computational model of tissue expansion based on a porcine animal model.

Authors:  Tianhong Han; Taeksang Lee; Joanna Ledwon; Elbert Vaca; Sergey Turin; Aaron Kearney; Arun K Gosain; Adrian B Tepole
Journal:  Acta Biomater       Date:  2021-10-08       Impact factor: 8.947

Review 3.  Multiscale simulations of left ventricular growth and remodeling.

Authors:  Hossein Sharifi; Charles K Mann; Alexus L Rockward; Mohammad Mehri; Joy Mojumder; Lik-Chuan Lee; Kenneth S Campbell; Jonathan F Wenk
Journal:  Biophys Rev       Date:  2021-08-25

4.  Acceleration of PDE-Based Biological Simulation Through the Development of Neural Network Metamodels.

Authors:  Lukasz Burzawa; Linlin Li; Xu Wang; Adrian Buganza-Tepole; David M Umulis
Journal:  Curr Pathobiol Rep       Date:  2020-11-06

5.  Multiscale modeling meets machine learning: What can we learn?

Authors:  Grace C Y Peng; Mark Alber; Adrian Buganza Tepole; William R Cannon; Suvranu De; Salvador Dura-Bernal; Krishna Garikipati; George Karniadakis; William W Lytton; Paris Perdikaris; Linda Petzold; Ellen Kuhl
Journal:  Arch Comput Methods Eng       Date:  2020-02-17       Impact factor: 7.302

6.  The Geometry of Incompatibility in Growing Soft Tissues: Theory and Numerical Characterization.

Authors:  Taeksang Lee; Maria A Holland; Johannes Weickenmeier; Arun K Gosain; Adrian Buganza Tepole
Journal:  J Mech Phys Solids       Date:  2020-10-17       Impact factor: 5.471

  6 in total

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