Literature DB >> 31240330

Radiomics in nuclear medicine: robustness, reproducibility, standardization, and how to avoid data analysis traps and replication crisis.

Alex Zwanenburg1,2,3,4.   

Abstract

Radiomics in nuclear medicine is rapidly expanding. Reproducibility of radiomics studies in multicentre settings is an important criterion for clinical translation. We therefore performed a meta-analysis to investigate reproducibility of radiomics biomarkers in PET imaging and to obtain quantitative information regarding their sensitivity to variations in various imaging and radiomics-related factors as well as their inherent sensitivity. Additionally, we identify and describe data analysis pitfalls that affect the reproducibility and generalizability of radiomics studies. After a systematic literature search, 42 studies were included in the qualitative synthesis, and data from 21 were used for the quantitative meta-analysis. Data concerning measurement agreement and reliability were collected for 21 of 38 different factors associated with image acquisition, reconstruction, segmentation and radiomics-specific processing steps. Variations in voxel size, segmentation and several reconstruction parameters strongly affected reproducibility, but the level of evidence remained weak. Based on the meta-analysis, we also assessed inherent sensitivity to variations of 110 PET image biomarkers. SUVmean and SUVmax were found to be reliable, whereas image biomarkers based on the neighbourhood grey tone difference matrix and most biomarkers based on the size zone matrix were found to be highly sensitive to variations, and should be used with care in multicentre settings. Lastly, we identify 11 data analysis pitfalls. These pitfalls concern model validation and information leakage during model development, but also relate to reporting and the software used for data analysis. Avoiding such pitfalls is essential for minimizing bias in the results and to enable reproduction and validation of radiomics studies.

Keywords:  Machine learning; Meta-analysis; Positron emission tomography; Radiomics; Reproducibility; Systematic review

Year:  2019        PMID: 31240330     DOI: 10.1007/s00259-019-04391-8

Source DB:  PubMed          Journal:  Eur J Nucl Med Mol Imaging        ISSN: 1619-7070            Impact factor:   9.236


  119 in total

1.  Radiomic machine-learning classifiers for prognostic biomarkers of advanced nasopharyngeal carcinoma.

Authors:  Bin Zhang; Xin He; Fusheng Ouyang; Dongsheng Gu; Yuhao Dong; Lu Zhang; Xiaokai Mo; Wenhui Huang; Jie Tian; Shuixing Zhang
Journal:  Cancer Lett       Date:  2017-06-10       Impact factor: 8.679

2.  Statistical methods for assessing agreement between two methods of clinical measurement.

Authors:  J M Bland; D G Altman
Journal:  Lancet       Date:  1986-02-08       Impact factor: 79.321

3.  Influence of gray level discretization on radiomic feature stability for different CT scanners, tube currents and slice thicknesses: a comprehensive phantom study.

Authors:  Ruben T H M Larue; Janna E van Timmeren; Evelyn E C de Jong; Giacomo Feliciani; Ralph T H Leijenaar; Wendy M J Schreurs; Meindert N Sosef; Frank H P J Raat; Frans H R van der Zande; Marco Das; Wouter van Elmpt; Philippe Lambin
Journal:  Acta Oncol       Date:  2017-09-08       Impact factor: 4.089

4.  Impact of [¹⁸F]FDG PET imaging parameters on automatic tumour delineation: need for improved tumour delineation methodology.

Authors:  Patsuree Cheebsumon; Maqsood Yaqub; Floris H P van Velden; Otto S Hoekstra; Adriaan A Lammertsma; Ronald Boellaard
Journal:  Eur J Nucl Med Mol Imaging       Date:  2011-08-20       Impact factor: 9.236

5.  Reproducibility of tumor uptake heterogeneity characterization through textural feature analysis in 18F-FDG PET.

Authors:  Florent Tixier; Mathieu Hatt; Catherine Cheze Le Rest; Adrien Le Pogam; Laurent Corcos; Dimitris Visvikis
Journal:  J Nucl Med       Date:  2012-03-27       Impact factor: 10.057

6.  The Impact of Optimal Respiratory Gating and Image Noise on Evaluation of Intratumor Heterogeneity on 18F-FDG PET Imaging of Lung Cancer.

Authors:  Willem Grootjans; Florent Tixier; Charlotte S van der Vos; Dennis Vriens; Catherine C Le Rest; Johan Bussink; Wim J G Oyen; Lioe-Fee de Geus-Oei; Dimitris Visvikis; Eric P Visser
Journal:  J Nucl Med       Date:  2016-06-09       Impact factor: 10.057

7.  Early-Stage Non-Small Cell Lung Cancer: Quantitative Imaging Characteristics of (18)F Fluorodeoxyglucose PET/CT Allow Prediction of Distant Metastasis.

Authors:  Jia Wu; Todd Aguilera; David Shultz; Madhu Gudur; Daniel L Rubin; Billy W Loo; Maximilian Diehn; Ruijiang Li
Journal:  Radiology       Date:  2016-04-05       Impact factor: 11.105

8.  Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.

Authors:  Christos Davatzikos; Saima Rathore; Spyridon Bakas; Sarthak Pati; Mark Bergman; Ratheesh Kalarot; Patmaa Sridharan; Aimilia Gastounioti; Nariman Jahani; Eric Cohen; Hamed Akbari; Birkan Tunc; Jimit Doshi; Drew Parker; Michael Hsieh; Aristeidis Sotiras; Hongming Li; Yangming Ou; Robert K Doot; Michel Bilello; Yong Fan; Russell T Shinohara; Paul Yushkevich; Ragini Verma; Despina Kontos
Journal:  J Med Imaging (Bellingham)       Date:  2018-01-11

9.  Machine Learning methods for Quantitative Radiomic Biomarkers.

Authors:  Chintan Parmar; Patrick Grossmann; Johan Bussink; Philippe Lambin; Hugo J W L Aerts
Journal:  Sci Rep       Date:  2015-08-17       Impact factor: 4.379

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

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  62 in total

1.  EJNMMI supplement: bringing AI and radiomics to nuclear medicine.

Authors:  Patrick Veit-Haibach; Irène Buvat; Ken Herrmann
Journal:  Eur J Nucl Med Mol Imaging       Date:  2019-12       Impact factor: 9.236

Review 2.  How to read and review papers on machine learning and artificial intelligence in radiology: a survival guide to key methodological concepts.

Authors:  Burak Kocak; Ece Ates Kus; Ozgur Kilickesmez
Journal:  Eur Radiol       Date:  2020-10-01       Impact factor: 5.315

3.  Repeatability of image features extracted from FET PET in application to post-surgical glioblastoma assessment.

Authors:  Nathaniel Barry; Pejman Rowshanfarzad; Roslyn J Francis; Anna K Nowak; Martin A Ebert
Journal:  Phys Eng Sci Med       Date:  2021-08-26

4.  Sensitivity analysis of FDG PET tumor voxel cluster radiomics and dosimetry for predicting mid-chemoradiation regional response of locally advanced lung cancer.

Authors:  Chunyan Duan; W Art Chaovalitwongse; Fangyun Bai; Daniel S Hippe; Shouyi Wang; Phawis Thammasorn; Larry A Pierce; Xiao Liu; Jianxin You; Robert S Miyaoka; Hubert J Vesselle; Paul E Kinahan; Ramesh Rengan; Jing Zeng; Stephen R Bowen
Journal:  Phys Med Biol       Date:  2020-10-07       Impact factor: 3.609

Review 5.  Functional imaging using radiomic features in assessment of lymphoma.

Authors:  Marius E Mayerhoefer; Lale Umutlu; Heiko Schöder
Journal:  Methods       Date:  2020-07-04       Impact factor: 3.608

Review 6.  Artificial Intelligence for Response Evaluation With PET/CT.

Authors:  Lise Wei; Issam El Naqa
Journal:  Semin Nucl Med       Date:  2020-11-11       Impact factor: 4.446

Review 7.  Value of PET imaging for radiation therapy.

Authors:  Constantin Lapa; Ursula Nestle; Nathalie L Albert; Christian Baues; Ambros Beer; Andreas Buck; Volker Budach; Rebecca Bütof; Stephanie E Combs; Thorsten Derlin; Matthias Eiber; Wolfgang P Fendler; Christian Furth; Cihan Gani; Eleni Gkika; Anca-L Grosu; Christoph Henkenberens; Harun Ilhan; Steffen Löck; Simone Marnitz-Schulze; Matthias Miederer; Michael Mix; Nils H Nicolay; Maximilian Niyazi; Christoph Pöttgen; Claus M Rödel; Imke Schatka; Sarah M Schwarzenboeck; Andrei S Todica; Wolfgang Weber; Simone Wegen; Thomas Wiegel; Constantinos Zamboglou; Daniel Zips; Klaus Zöphel; Sebastian Zschaeck; Daniela Thorwarth; Esther G C Troost
Journal:  Strahlenther Onkol       Date:  2021-07-14       Impact factor: 3.621

8.  Repeatability of 18F-FDG PET Radiomic Features in Cervical Cancer.

Authors:  John P Crandall; Tyler J Fraum; MinYoung Lee; Linda Jiang; Perry Grigsby; Richard L Wahl
Journal:  J Nucl Med       Date:  2020-10-02       Impact factor: 10.057

9.  Machine learning based on clinico-biological features integrated 18F-FDG PET/CT radiomics for distinguishing squamous cell carcinoma from adenocarcinoma of lung.

Authors:  Caiyue Ren; Jianping Zhang; Ming Qi; Jiangang Zhang; Yingjian Zhang; Shaoli Song; Yun Sun; Jingyi Cheng
Journal:  Eur J Nucl Med Mol Imaging       Date:  2020-10-15       Impact factor: 9.236

10.  Quantitative Radiomics Features in Diffuse Large B-Cell Lymphoma: Does Segmentation Method Matter?

Authors:  Jakoba J Eertink; Elisabeth A G Pfaehler; Sanne E Wiegers; Tim van; Pieternella J Lugtenburg; Otto S Hoekstra; Josée M Zijlstra; Henrica C W de Vet; Ronald Boellaard
Journal:  J Nucl Med       Date:  2021-07-16       Impact factor: 10.057

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