Literature DB >> 31217828

Brain connectivity-informed regularization methods for regression.

Marta Karas1, Damian Brzyski2, Mario Dzemidzic3, Joaquín Goñi4, David A Kareken5, Timothy W Randolph6, Jaroslaw Harezlak7.   

Abstract

One of the challenging problems in brain imaging research is a principled incorporation of information from different imaging modalities. Frequently, each modality is analyzed separately using, for instance, dimensionality reduction techniques, which result in a loss of mutual information. We propose a novel regularization-method to estimate the association between the brain structure features and a scalar outcome within the linear regression framework. Our regularization technique provides a principled approach to use external information from the structural brain connectivity and inform the estimation of the regression coefficients. Our proposal extends the classical Tikhonov regularization framework by defining a penalty term based on the structural connectivity-derived Laplacian matrix. Here, we address both theoretical and computational issues. The approach is first illustrated using simulated data and compared with other penalized regression methods. We then apply our regularization method to study the associations between the alcoholism phenotypes and brain cortical thickness using a diffusion imaging derived measure of structural connectivity. Using the proposed methodology in 148 young male subjects with a risk for alcoholism, we found a negative associations between cortical thickness and drinks per drinking day in bilateral caudal anterior cingulate cortex, left lateral OFC and left precentral gyrus.

Entities:  

Keywords:  Brain connectivity; Brain structure; Laplacian matrix; Linear Regression; Penalized methods; Structured penalties

Year:  2017        PMID: 31217828      PMCID: PMC6583926          DOI: 10.1007/s12561-017-9208-x

Source DB:  PubMed          Journal:  Stat Biosci        ISSN: 1867-1764


  17 in total

1.  Binge drinking differentially affects adolescent male and female brain morphometry.

Authors:  Lindsay M Squeglia; Scott F Sorg; Alecia Dager Schweinsburg; Reagan R Wetherill; Carmen Pulido; Susan F Tapert
Journal:  Psychopharmacology (Berl)       Date:  2011-09-28       Impact factor: 4.530

2.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.

Authors:  Rahul S Desikan; Florent Ségonne; Bruce Fischl; Brian T Quinn; Bradford C Dickerson; Deborah Blacker; Randy L Buckner; Anders M Dale; R Paul Maguire; Bradley T Hyman; Marilyn S Albert; Ronald J Killiany
Journal:  Neuroimage       Date:  2006-03-10       Impact factor: 6.556

3.  Network-constrained regularization and variable selection for analysis of genomic data.

Authors:  Caiyan Li; Hongzhe Li
Journal:  Bioinformatics       Date:  2008-03-01       Impact factor: 6.937

Review 4.  Network attributes for segregation and integration in the human brain.

Authors:  Olaf Sporns
Journal:  Curr Opin Neurobiol       Date:  2013-01-04       Impact factor: 6.627

Review 5.  FreeSurfer.

Authors:  Bruce Fischl
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

6.  Effects of alcohol dependence on cortical thickness as determined by magnetic resonance imaging.

Authors:  Reza Momenan; Leah E Steckler; Ziad S Saad; Stefanie van Rafelghem; Michael J Kerich; Daniel W Hommer
Journal:  Psychiatry Res       Date:  2012-11-11       Impact factor: 3.222

7.  Structured penalties for functional linear models-partially empirical eigenvectors for regression.

Authors:  Timothy W Randolph; Jaroslaw Harezlak; Ziding Feng
Journal:  Electron J Stat       Date:  2012-01-01       Impact factor: 1.125

8.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

9.  Beer flavor provokes striatal dopamine release in male drinkers: mediation by family history of alcoholism.

Authors:  Brandon G Oberlin; Mario Dzemidzic; Stella M Tran; Christina M Soeurt; Daniel S Albrecht; Karmen K Yoder; David A Kareken
Journal:  Neuropsychopharmacology       Date:  2013-04-15       Impact factor: 7.853

10.  Mapping the structural core of human cerebral cortex.

Authors:  Patric Hagmann; Leila Cammoun; Xavier Gigandet; Reto Meuli; Christopher J Honey; Van J Wedeen; Olaf Sporns
Journal:  PLoS Biol       Date:  2008-07-01       Impact factor: 8.029

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  2 in total

1.  Connectivity-informed adaptive regularization for generalized outcomes.

Authors:  Damian Brzyski; Marta Karas; Beau M Ances; Mario Dzemidzic; Joaquín Goñi; Timothy W Randolph; Jaroslaw Harezlak
Journal:  Can J Stat       Date:  2021-02-15       Impact factor: 0.875

2.  Incorporation of spatial- and connectivity-based cortical brain region information in regularized regression: Application to Human Connectome Project data.

Authors:  Aleksandra Steiner; Kausar Abbas; Damian Brzyski; Kewin Pączek; Timothy W Randolph; Joaquín Goñi; Jaroslaw Harezlak
Journal:  Front Neurosci       Date:  2022-09-28       Impact factor: 5.152

  2 in total

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