Literature DB >> 35002039

Connectivity-informed adaptive regularization for generalized outcomes.

Damian Brzyski1, Marta Karas2, Beau M Ances3, Mario Dzemidzic4, Joaquín Goñi5, Timothy W Randolph6, Jaroslaw Harezlak7,8.   

Abstract

One of the challenging problems in neuroimaging is the principled incorporation of information from different imaging modalities. Data from each modality are frequently analyzed separately using, for instance, dimensionality reduction techniques, which result in a loss of mutual information. We propose a novel regularization method, generalized ridgified Partially Empirical Eigenvectors for Regression (griPEER), to estimate associations between the brain structure features and a scalar outcome within the generalized linear regression framework. griPEER improves the regression coefficient estimation by providing a principled approach to use external information from the structural brain connectivity. Specifically, we incorporate a penalty term, derived from the structural connectivity Laplacian matrix, in the penalized generalized linear regression. In this work, we address both theoretical and computational issues and demonstrate the robustness of our method despite incomplete information about the structural brain connectivity. In addition, we also provide a significance testing procedure for performing inference on the estimated coefficients. Finally, griPEER is evaluated both in extensive simulation studies and using clinical data to classify HIV+ and HIV- individuals.

Entities:  

Keywords:  Brain connectivity; Laplacian matrix; brain structure; generalized linear regression; penalized regression; structured penalties

Year:  2021        PMID: 35002039      PMCID: PMC8730330          DOI: 10.1002/cjs.11606

Source DB:  PubMed          Journal:  Can J Stat        ISSN: 0319-5724            Impact factor:   0.875


  17 in total

Review 1.  Connectivity-based parcellation: Critique and implications.

Authors:  Simon B Eickhoff; Bertrand Thirion; Gaël Varoquaux; Danilo Bzdok
Journal:  Hum Brain Mapp       Date:  2015-09-27       Impact factor: 5.038

2.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.

Authors:  Rahul S Desikan; Florent Ségonne; Bruce Fischl; Brian T Quinn; Bradford C Dickerson; Deborah Blacker; Randy L Buckner; Anders M Dale; R Paul Maguire; Bradley T Hyman; Marilyn S Albert; Ronald J Killiany
Journal:  Neuroimage       Date:  2006-03-10       Impact factor: 6.556

3.  Network-constrained regularization and variable selection for analysis of genomic data.

Authors:  Caiyan Li; Hongzhe Li
Journal:  Bioinformatics       Date:  2008-03-01       Impact factor: 6.937

Review 4.  Imaging-based parcellations of the human brain.

Authors:  Simon B Eickhoff; B T Thomas Yeo; Sarah Genon
Journal:  Nat Rev Neurosci       Date:  2018-11       Impact factor: 34.870

Review 5.  Network attributes for segregation and integration in the human brain.

Authors:  Olaf Sporns
Journal:  Curr Opin Neurobiol       Date:  2013-01-04       Impact factor: 6.627

6.  Association of Brain Structure Changes and Cognitive Function With Combination Antiretroviral Therapy in HIV-Positive Individuals.

Authors:  Ryan Sanford; Lesley K Fellows; Beau M Ances; D Louis Collins
Journal:  JAMA Neurol       Date:  2018-01-01       Impact factor: 18.302

Review 7.  Modular Brain Networks.

Authors:  Olaf Sporns; Richard F Betzel
Journal:  Annu Rev Psychol       Date:  2015-09-21       Impact factor: 24.137

8.  Structured penalties for functional linear models-partially empirical eigenvectors for regression.

Authors:  Timothy W Randolph; Jaroslaw Harezlak; Ziding Feng
Journal:  Electron J Stat       Date:  2012-01-01       Impact factor: 1.125

9.  Intrinsic and task-evoked network architectures of the human brain.

Authors:  Michael W Cole; Danielle S Bassett; Jonathan D Power; Todd S Braver; Steven E Petersen
Journal:  Neuron       Date:  2014-07-02       Impact factor: 17.173

10.  Mapping the structural core of human cerebral cortex.

Authors:  Patric Hagmann; Leila Cammoun; Xavier Gigandet; Reto Meuli; Christopher J Honey; Van J Wedeen; Olaf Sporns
Journal:  PLoS Biol       Date:  2008-07-01       Impact factor: 8.029

View more
  1 in total

1.  Incorporation of spatial- and connectivity-based cortical brain region information in regularized regression: Application to Human Connectome Project data.

Authors:  Aleksandra Steiner; Kausar Abbas; Damian Brzyski; Kewin Pączek; Timothy W Randolph; Joaquín Goñi; Jaroslaw Harezlak
Journal:  Front Neurosci       Date:  2022-09-28       Impact factor: 5.152

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.