| Literature DB >> 31201374 |
Andre F Marquand1,2,3, Seyed Mostafa Kia4,5, Mariam Zabihi4,5, Thomas Wolfers4,5, Jan K Buitelaar4,5,6, Christian F Beckmann4,5,7.
Abstract
Normative models are a class of emerging statistical techniques useful for understanding the heterogeneous biology underlying psychiatric disorders at the level of the individual participant. Analogous to normative growth charts used in paediatric medicine for plotting child development in terms of height or weight as a function of age, normative models chart variation in clinical cohorts in terms of mappings between quantitative biological measures and clinically relevant variables. An emerging body of literature has demonstrated that such techniques are excellent tools for parsing the heterogeneity in clinical cohorts by providing statistical inferences at the level of the individual participant with respect to the normative range. Here, we provide a unifying review of the theory and application of normative modelling for understanding the biological and clinical heterogeneity underlying mental disorders. We first provide a statistically grounded yet non-technical overview of the conceptual underpinnings of normative modelling and propose a conceptual framework to link the many different methodological approaches that have been proposed for this purpose. We survey the literature employing these techniques, focusing principally on applications of normative modelling to quantitative neuroimaging-based biomarkers in psychiatry and, finally, we provide methodological considerations and recommendations to guide future applications of these techniques. We show that normative modelling provides a means by which the importance of modelling individual differences can be brought from theory to concrete data analysis procedures for understanding heterogeneous mental disorders and ultimately a promising route towards precision medicine in psychiatry.Entities:
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Year: 2019 PMID: 31201374 PMCID: PMC6756106 DOI: 10.1038/s41380-019-0441-1
Source DB: PubMed Journal: Mol Psychiatry ISSN: 1359-4184 Impact factor: 13.437
Fig. 1Conceptual overview of normative modelling. a Normative modelling is similar to the use of growth charts in paediatric medicine, except the conventional response variable (e.g. height or weight) is substituted for a quantitative biological readout (e.g. regional brain activity). The classical covariates (age and sex) can also be substituted for clinically relevant variables. Normative modelling provides statistical inference at the level of each subject with respect to the normative model (red figure). b Procedural overview of normative modelling. After the choice of reference cohort and variables, the normative model is estimated, before being validated out of sample on new response variables and covariates (y* and x*, respectively). Finally, the estimated model can be applied to a target cohort (e.g. clinical cohort). c A common configuration for normative modelling of neuroimaging data, where a separate normative model is estimated for each sampled brain location. This can be described by a set of functions (y = f(x)) predicting neurobiological response variables (y) from clinical covariates (x). d Normative models can also be estimated for the opposite mapping, where brain measures are chosen as covariates and age or other covariates are chosen as a response variable. See text for further details
Studies utilizing normative modelling techniques in clinical conditions
| Clinical phenotype | Normative response variable | Covariates | Reference cohort | Target cohort | Algorithm | Separate variance components | Single subject prediction | Ref. |
|---|---|---|---|---|---|---|---|---|
| ADHD diagnosis | Functional connectivity measures derived from resting fMRI | Age | Population-based cohort | Participants with ADHD | Polynomial regression | No | Numerical | [ |
| ADHD diagnosis | Brain volume | Age and gender | Healthy reference cohort | Adults with ADHD | Gaussian process regression | Yes | Statistical | [ |
| ADHD symptoms | Reward-related brain activity derived from task fMRI | Delay discounting | Healthy volunteers | Healthy volunteers | Gaussian process regression and extreme value statistics | Yes | Statistical | [ |
| Autism | Cortical Thickness | Age and gender | Typically developing cohort | Participants with autism | Gaussian process regression and extreme value statistics | Yes | Statistical | [ |
| Autism | Cortical thickness | Age | Typically developing cohort | Participants with autism | Local polynomial regression | No | Statistical | [ |
| Autism | Alpha band brain activity derived from electro-encephalogaphy | Age | Typically developing cohort | Participants with autism | Local polynomial regression | No | Numerical | [ |
| Bipolar disorder | Brain volume | Age and gender | Healthy reference cohort | Adults with Bipolar disorder | Gaussian process regression | Yes | Statistical | [ |
| Cognition: processing speed | Age | Brain volume | Healthy volunteers | Healthy volunteers | Support vector regression | No | Statistical | [ |
| Cognition: Inhibitory Control | Task-related fMRI data | Age | Healthy volunteers | Healthy volunteers | Hierarchical linear modelling | No | Numerical | [ |
| Sustained attention | Functional connectivity measures derived from resting fMRI | Age | Population-based cohort | Participants with ADHD | Polynomial regression | No | Statistical | [ |
| Mild cognitive impairment and dementia | Brain volume | Age | Population-based cohort | Participants with mild cognitive impairment and Alzheimer’s disease | Partial least squares and quantile regression | No | Statistical | [ |
| Mild cognitive impairment and dementia | Brain volume | Age, sex, total grey- and white matter volume, total cerebrospinal fluid, MRI field strength | Multi-study healthy reference cohort | Healthy participants, participants with mild cognitive impairment and dementia | Gaussian process regression | Yes | Statistical | [ |
| Psychosis symptoms | Age | Cognitive scores measuring executive function, memory, complex cognition, social cognition and sensorimotor processing | Developmental study cohort containing typically developing adolescents and adolescents with psychosis spectrum symptoms (2 levels) and other psychopathologies | Developmental study cohort containing typically developing adolescents and adolescents with psychosis spectrum symptoms (2 levels) and other psychopathologies | Linear regression | No | Numerical | [ |
| Schizophrenia | Brain volume | Age and gender | Healthy reference cohort | Adults with Schizophrenia | Gaussian process regression | Yes | Statistical | [ |
| Schizophrenia | Longitudinal cortical thickness measures derived from structural MRI | Age | Healthy reference cohort | Children, adolescents and adults with childhood onset schizophrenia | Penalized spline models | No | Numerical | [ |
Different methods are classified in terms of the choice of covariates and response variables, whether they estimate separate variance components and in terms of the degree of single-subject prediction that they provide (see text for details)
Fig. 2Separating different sources of uncertainty in normative modelling. Panels a and b show the simplest approach for normative models which do not quantify uncertainty at all (a: linear model, b: non-linear model). Instead, deviations from the model (red figures) are assessed via the residuals from a regression function (blue lines). In red, the corresponding equation for assessing deviations from the model is shown where deviation from the normative model are assessed simply as the difference between the true (y) and predicted () normative response variable for each subject. c Some models estimate centiles of variation explicitly either via separate model fits or post hoc to the initial regression fit (blue dotted lines). This captures ‘aleatoric’ or irreducible variation in the cohort which shows how subjects vary across the population (). However, there is also uncertainty associated with each of these centiles of variation (shaded blue regions), which is highest in regions of low data density and should be accounted for. d Some models separate and take all sources of variation into account (i.e. also including ‘epistemic’ uncertainty (), which can be reduced by the addition of more data). This allows the model to automatically adjust predictions, becoming more conservative in regions where data are sparse. This is shown by a widening of the statistical intervals, although note that these intervals now have a different interpretation to those in (c). For example, the right-most figure in (d) would not be judged as an outlier, whereas the same figure may be judged as an outlier in models that do not account for all sources of uncertainty (c). This is important to prevent a subject being declared as ‘atypical’ simply because of data sparsity. See text for further details