Literature DB >> 31183839

Spectroscopic Evidence for Lactam Formation in Terminal Ornithine b2+ and b3+ Fragment Ions.

Zachary M Smith1, Xiye Wang1, Jonathan R Scheerer1, Jonathan Martens2, Giel Berden2, Jos Oomens2, Vincent Steinmetz3, Arpad Somogyi4, Vicki Wysocki4, John C Poutsma5.   

Abstract

Infrared multiple photon dissociation action spectroscopy was performed on the AlaOrn b2+ and AlaAlaOrn b3+ fragment ions from ornithine-containing tetrapeptides. Infrared spectra were obtained in the fingerprint region (1000-2000 cm-1) using the infrared free electron lasers at the Centre Laser Infrarouge d'Orsay (CLIO) facility in Orsay, France, and the free electron lasers for infrared experiments (FELIX) facility in Nijmegen, the Netherlands. A novel terminal ornithine lactam AO+ b2+ structure was synthesized for experimental comparison and spectroscopy confirms that the b2+ fragment ion from AOAA forms a lactam structure. Comparison of experimental spectra with scaled harmonic frequencies at the B3LYP/6-31+G(d,p) level of theory shows that AO+ b2+ forms a terminal lactam protonated either on the lactam carbonyl oxygen or the N-terminal nitrogen atom. Several low-lying conformers of these isomers are likely populated following IRMPD dissociation. Similarly, a comparison of the experimental IRMPD spectrum with calculated spectra shows that AAO+ b3+-ions also adopt a lactam structure, again with multiple different protonation sites, during fragmentation. This study provides spectroscopic confirmation for the lactam cyclization proposed for the "ornithine effect" and represents an alternative bn+ structure to the oxazolone and diketopiperazine/macrocycle structures most often formed.

Entities:  

Keywords:  IRMPD spectroscopy; Peptide fragmentation; b2+ ions

Year:  2019        PMID: 31183839      PMCID: PMC6697629          DOI: 10.1007/s13361-019-02244-0

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  33 in total

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Authors:  Béla Paizs; Sándor Suhai
Journal:  Mass Spectrom Rev       Date:  2005 Jul-Aug       Impact factor: 10.946

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Authors:  Muriel Amblard; Jean-Alain Fehrentz; Jean Martinez; Gilles Subra
Journal:  Mol Biotechnol       Date:  2006-07       Impact factor: 2.695

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Authors:  J R Roscioli; L R McCunn; M A Johnson
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

4.  What is the structure of b(2) ions generated from doubly protonated tryptic peptides?

Authors:  Benjamin J Bythell; Arpád Somogyi; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2008-12-06       Impact factor: 3.109

Review 5.  Vibrational spectroscopy of bare and solvated ionic complexes of biological relevance.

Authors:  Nick C Polfer; Jos Oomens
Journal:  Mass Spectrom Rev       Date:  2009 May-Jun       Impact factor: 10.946

6.  Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine.

Authors:  Jos Oomens; Sarah Young; Sam Molesworth; Michael van Stipdonk
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-01       Impact factor: 3.109

7.  Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections.

Authors:  Jeng-Da Chai; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2008-09-29       Impact factor: 3.676

8.  Proton affinity of canavanine and canaline, oxyanalogues of arginine and ornithine, from the extended kinetic method.

Authors:  Erica J Andriole; Kathryn E Colyer; Elizabeth Cornell; John C Poutsma
Journal:  J Phys Chem A       Date:  2006-10-12       Impact factor: 2.781

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Authors:  Lori L Smith; Kristin A Herrmann; Vicki H Wysocki
Journal:  J Am Soc Mass Spectrom       Date:  2005-12-09       Impact factor: 3.109

10.  IRMPD spectroscopy shows that AGG forms an oxazolone b2+ ion.

Authors:  Sung Hwan Yoon; Julia Chamot-Rooke; Brittany R Perkins; Amy E Hilderbrand; John C Poutsma; Vicki H Wysocki
Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

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