Literature DB >> 19013079

Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine.

Jos Oomens1, Sarah Young, Sam Molesworth, Michael van Stipdonk.   

Abstract

Infrared multiple photon dissociation (IRMPD) spectroscopy is used to identify the structure of the b(2)(+) ion generated from protonated tri-alanine by collision induced dissociation (CID). The IRMPD spectrum of b(2)(+) differs markedly from that of protonated cyclo-alanine-alanine, demonstrating that the product is not a diketopiperazine. Instead, comparison of the IRMPD spectrum of b(2)(+) to spectra predicted by density functional theory provides compelling evidence for an oxazolone structure protonated at the oxazolone N-atom.

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Year:  2008        PMID: 19013079     DOI: 10.1016/j.jasms.2008.10.012

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  23 in total

1.  An investigation of fragmentation mechanisms of doubly protonated tryptic peptides.

Authors:  X J Tang; R K Boyd
Journal:  Rapid Commun Mass Spectrom       Date:  1992-11       Impact factor: 2.419

2.  Chemical ionization of amino acids.

Authors:  C W Tsang; A G Harrison
Journal:  J Am Chem Soc       Date:  1976-03-17       Impact factor: 15.419

Review 3.  Reaction products in mass spectrometry elucidated with infrared spectroscopy.

Authors:  Nick C Polfer; Jos Oomens
Journal:  Phys Chem Chem Phys       Date:  2007-05-22       Impact factor: 3.676

4.  Role of the site of protonation in the low-energy decompositions of gas-phase peptide ions.

Authors:  K A Cox; S J Gaskell; M Morris; A Whiting
Journal:  J Am Soc Mass Spectrom       Date:  1996-06       Impact factor: 3.109

5.  The structure and fragmentation of B n (n≥3) ions in peptide spectra.

Authors:  T Yalcin; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1996-03       Impact factor: 3.109

6.  Structure and fragmentation of b2 ions in peptide mass spectra.

Authors:  A G Harrison; I G Csizmadia; T H Tang
Journal:  J Am Soc Mass Spectrom       Date:  2000-05       Impact factor: 3.109

7.  Why Are B ions stable species in peptide spectra?

Authors:  T Yalcin; C Khouw; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1995-12       Impact factor: 3.109

8.  Spectroscopic investigation of H atom transfer in a gas-phase dissociation reaction: McLafferty rearrangement of model gas-phase peptide ions.

Authors:  Michael J Van Stipdonk; Dale R Kerstetter; Christopher M Leavitt; Gary S Groenewold; Jeffrey Steill; Jos Oomens
Journal:  Phys Chem Chem Phys       Date:  2008-04-23       Impact factor: 3.676

9.  Infrared spectroscopy and theoretical studies on gas-phase protonated leu-enkephalin and its fragments: direct experimental evidence for the mobile proton.

Authors:  Nick C Polfer; Jos Oomens; Sandor Suhai; Béla Paizs
Journal:  J Am Chem Soc       Date:  2007-04-12       Impact factor: 15.419

10.  Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of protonated peptides: Evidence for intraionic interactions.

Authors:  O Burlet; C Y Yang; S J Gaskell
Journal:  J Am Soc Mass Spectrom       Date:  1992-05       Impact factor: 3.109

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  37 in total

1.  Separation and identification of structural isomers by quadrupole collision-induced dissociation-hydrogen/deuterium exchange-infrared multiphoton dissociation (QCID-HDX-IRMPD).

Authors:  Ashley C Gucinski; Arpád Somogyi; Julia Chamot-Rooke; Vicki H Wysocki
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-02       Impact factor: 3.109

2.  Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap.

Authors:  Tobias N Wassermann; Oleg V Boyarkin; Béla Paizs; Thomas R Rizzo
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-30       Impact factor: 3.109

3.  Diagnostic NH and OH vibrations for oxazolone and diketopiperazine structures: b2 from protonated triglycine.

Authors:  Da Wang; Kerim Gulyuz; Corey N Stedwell; Nick C Polfer
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-13       Impact factor: 3.109

4.  Carbonyl charge solvation patterns may relate to fragmentation classes in collision-activated dissociation.

Authors:  Hongqian Yang; David M Good; David van der Spoel; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-12       Impact factor: 3.109

5.  Effect of the His residue on the cyclization of b ions.

Authors:  Benjamin J Bythell; Michaela Knapp-Mohammady; Béla Paizs; Alex G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  2010-05-13       Impact factor: 3.109

6.  Towards understanding the tandem mass spectra of protonated oligopeptides. 2: The proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp).

Authors:  Christian Bleiholder; Sándor Suhai; Alex G Harrison; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-12       Impact factor: 3.109

7.  Diagnosing the protonation site of b2 peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region.

Authors:  Rajeev K Sinha; Undine Erlekam; Benjamin J Bythell; Béla Paizs; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-21       Impact factor: 3.109

8.  Fragmentation reactions of b(5) and a (5) ions containing proline--the structures of a(5) ions.

Authors:  Alex G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-20       Impact factor: 3.109

9.  Structures of a(n)* ions derived from protonated pentaglycine and pentaalanine: results from IRMPD spectroscopy and DFT calculations.

Authors:  Junfang Zhao; Justin Kai-Chi Lau; Josipa Grzetic; Udo H Verkerk; Jos Oomens; K W Michael Siu; Alan C Hopkinson
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-12       Impact factor: 3.109

10.  Evidence of diketopiperazine and oxazolone structures for HA b2+ ion.

Authors:  Brittany R Perkins; Julia Chamot-Rooke; Sung Hwan Yoon; Ashley C Gucinski; Arpád Somogyi; Vicki H Wysocki
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

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