| Literature DB >> 31174308 |
Danielle N Simkus1,2, José C Aponte3,4, Jamie E Elsila5, Eric T Parker6, Daniel P Glavin7, Jason P Dworkin8.
Abstract
Soluble organic compositions of extraterrestrial samples offer valuable insights into the prebiotic organic chemistry of the solar system. This review provides a summary of the techniques commonly used for analyzing amino acids, amines, monocarboxylic acids, aldehydes, and ketones in extraterrestrial samples. Here, we discuss possible effects of various experimental factors (e.g., extraction protocols, derivatization methods, and chromatographic techniques) in order to highlight potential influences on the results obtained from different methodologies. This detailed summary and assessment of current techniques is intended to serve as a basic guide for selecting methodologies for soluble organic analyses and to emphasize some key considerations for future method development.Entities:
Keywords: amino acids; analytical chemistry; astrobiology; astrochemistry; carbonaceous chondrites; extraterrestrial samples; soluble organics
Year: 2019 PMID: 31174308 PMCID: PMC6617175 DOI: 10.3390/life9020047
Source DB: PubMed Journal: Life (Basel) ISSN: 2075-1729
Figure 1Relative abundances of chondrites, achondrites, stony iron meteorites and iron meteorites, and of individual chondrite groups, based on (A) total numbers of meteorites (falls + finds) identified for each category and (B) total mass of meteorite material available from each category. Relative proportions are approximate values based on data obtained from the Meteoritical Bulletin Database [21] (March 2019).
Scheme 1A simplified schematic of potential synthetic relationships between extraterrestrial water-soluble (“free”) amines(1), amino acids(2), aldehydes/ketones(3), and monocarboxylic acids(4). These reactions include amine synthesis via reductive amination of aldehydes/ketones [43] and decarboxylation/deamination of amino acids, carboxylic acid synthesis via oxidation of aldehydes [44], and amino acid synthesis via Strecker reactions and CO2 addition to amines [45]. Other potential mechanisms for amino acid synthesis not illustrated here include, for example, reductive amination of keto acids [46], β-amino acid synthesis via Michael addition of ammonia to α,β-unsaturated nitriles [17], and γ- and δ-amino acid synthesis via decarboxylation of α-amino dicarboxylic acids [47]. Bound amino acids that are released from samples via acid hydrolysis may be derived from larger organic polymers or from transition metal complexes. Detailed descriptions of these reaction mechanisms have been described elsewhere (see [5] and references therein).
Figure 2Simplified schematic of a typical protocol for extracting and analyzing amino acids, amines, monocarboxylic acids, aldehydes, and ketones in extraterrestrial materials.
Analyses of meteoritic amino acids.
| Analyzed as | Extraction and Analytical Methodology | Author (Year Published) | Meteorites Analyzed |
|---|---|---|---|
| TFA alkyl (methyl, | Meteorite powder heated or refluxed in water for 8–24 h at 110–110 °C. Aqueous portion removed, dried, optionally acid-hydrolyzed, desalted using cation exchange resin, and derivatized for GC, GC-MS and/or GC-IRMS analysis. | Kvenvolden et al. (1970, 1971) [ | |
| OPA/NAC, OPA/IBLC and OPA/IBDC-derivatives | Meteorite powder extracted in water for 6–24 h at 100–110 °C. Aqueous portion removed, dried, optionally acid-hydrolyzed, desalted using cation exchange resin, and derivatized for HPLC-FD and/or TOF-MS analysis. | Zenobi et al. (1992) [ | |
| OPA/NAC derivatives | Meteorite powder extracted overnight at room temperature in 1 M or 6 M HCl. Supernatant separated, dried, optionally acid-hydrolyzed, desalted using cation exchanged resin, then derivatized for HPLC analysis. | Bada et al. (1998) [ | |
| Ninhydrin derivatives | Meteorite powder refluxed in water for 20–24 h. Aqueous portion separated, dried, re-dissolved in water and split in half for acid-hydrolyzed and unhydrolyzed analyses using LC. | Cronin and Moore (1971,1976) [ | |
| Bulk underivatized amino acids | Meteorite powder refluxed in water at 100–110 °C for 24 h. Aqueous portion removed, dried, acid hydrolyzed, and then desalted using cation exchange resin for IRMS. | Epstein et al. (1987) [ | |
| PFP alkyl (( | Meteorite powder refluxed in water at 100 °C for 8 h. Aqueous portion separated by filtration, dried in a rotary evaporator, hydrolyzed, dried and desalted using cation exchange resin for GC-MS or GC-IRMS analyses. | Engel and Nagy (1982) [ | |
| PFP ester derivatives | Meteorite powder refluxed in water at 100 °C for 6 h. Aqueous portion separated, dried, acid hydrolyzed, and derivatized for GC-MS analysis. | Hilts et al. (2014) [ | |
| MTBSTFA derivatives | Meteorite powder stirred in water for 46 h with intermittent sonication. Aqueous portion concentrated by rotary evaporation, treated with ethanol for removal of salts, then acidified and desalted using cation exchange resin for GC-MS analysis. | Cooper and Cronin (1995) [ | |
| ECEE or ECHFBE derivatives | Meteorite powder extracted in water at 100 °C for 20 h. Aqueous portion was separated by centrifugation, split for acid-hydrolyzed and unhydrolyzed analyses, dried for derivatization and multidimensional (GC x GC) analysis. | Meierhenrich et al. (2004) [ | |
| PBSE derivatives | Meteorite powder extracted via subcritical water extraction at 200 °C and 3000 MPa with 5 min equilibration time. Portion of the extract was diluted, derivatized and analyzed using micellar electrokinetic chromatography. | Chiesl et al. (2009) [ | |
| OPA derivatives | Meteorite powder in water at 110 °C or at room temperature for 24 h. Aqueous portion separated by filtration, dried in a rotary evaporator, acid hydrolyzed, dried, and re-dissolved in aqueous sodium citrate for liquid chromatography. | Cronin et al. (1979) [ |
For studies where more than one derivatization method was used, the methodology used for quantification is listed, unless otherwise noted. a A portion of the aqueous extract was analyzed by HPLC for quantification. Only the methodology used for GC and GC-IRMS analysis is described here. b Amino acids were also analyzed using a microchip capillary electrophoresis technique. Only the methodology used for LC analysis is described here. TFA: trifluoroacetic anhydride; OPA: o-phthalaldehyde; NAC: N-L-acetyl cysteine; IBLC: N-isobutyryl-l-cysteine; IBDC: N-isobutyryl-d-cysteine; PFP: N-pentafluoropropionic anhydride; MTBSTFA: N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide with 1% tert-butyldimethylsilyl chloride; ECEE: N-ethoxycarbonyl ethyl esters; ECHFBE: N-ethoxycarbonyl heptafluorobutyl ester; PBSE: Pacific Blue succinimidyl ester.
Compound-specific analyses of meteoritic amines.
| Analyzed as | Extraction and Analytical Methodology | Author (Year Published) | Meteorites Analyzed |
|---|---|---|---|
| Underivatized amines, DNP derivatives, and OPA derivatives | Meteorite powders refluxed for 24 h. Aqueous portion removed after centrifugation, then dried and acid-hydrolyzed. Separate set of meteorite powders extracted in water at 120 °C for four days with no subsequent hydrolysis step. Analyzed by GC-MS and ion exchange chromatography | Jungclaus et al. (1976) [ | |
| PFP and OPA derivatives | Meteorite powders extracted in triple-distilled water at 110 °C for 24 h. Aqueous portion removed after acidification and cryogenic transfer. Residue taken to pH > 12.5 using NaOH, frozen and acidified for cryogenic transfer of volatile amines for GC-MS and ion exchange chromatography | Pizzarello et al. (1994) [ | |
| TFA derivatives (amides) | Meteorite powder put in degassed glass vial with triple-distilled water at 100 °C and intermittent sonication for 20 h. Aqueous extract was made acidic and concentrated, then it was made basic and cryogenically transferred, acidified, dried in rotary evaporator, and derivatized for GC-MS analysis | Pizzarello et al. (2008) [ | |
| TFA derivatives (amides) | Meteorite powder put in degassed glass vial with triple-distilled water at 100 °C and intermittent sonication for 20 h. Aqueous portion separated by centrifugation, dried completely, acid hydrolyzed, re-dried and re-dissolved in water, made basic, cryogenically transferred, acidified, dried in rotary evaporator, and derivatized for GC-MS analysis | Pizzarello and Holmes (2009) [ | |
| TFA derivatives (amides) | Meteorite powders extracted in water at 25 °C for 24 h, followed by a 100 °C 24 h extraction. Aqueous portions separated after each extraction period were made basic, cryogenically transferred, acidified, dried in rotary evaporator, and derivatized for GC-MS analysis | Monroe and Pizzarello (2011) [ | |
| TFA derivatives (amides) | Meteorite powder put in degassed glass vial with triple-distilled water at 100 °C for 20 h. Aqueous portion separated by decantation, concentrated, basified, cryogenically transferred, acidified, dried in rotary evaporator, and derivatized for GC-MS analysis | Pizzarello et al. (2012) [ | |
| TPC derivatives (amides) | Meteorite powders extracted in water at 100 °C for 24 h. Aqueous extracts separated after centrifugation were acidified and taken to dryness. Dry residues were re-dissolved in water and treated with NaOH, then centrifuged and the aqueous fractions separated from precipitate were re-acidified and dried completely. The residues were dissolved in diluted aqueous NaOH, extracted using DCM and derivatized for GC-MS and GC-IRMS analyses. | Aponte et al. (2014, 2015, 2016, 2017) [ |
DNP: 2,4-dinitrophenyl; OPA: o-phthalaldehyde; PFP: N-pentafluoropropionic anhydride; TFA: trifluoroacetic anhydride; TPC: (S)-(–)-N-(trifluoroacetyl)pyrrolidine-2-carbonyl chlorid.
Compound-specific analyses of meteoritic monocarboxylic acids.
| Analyzed as | Extraction and Analytical Methodology | Author (Year Published) | Meteorites Analyzed |
|---|---|---|---|
| Methyl esters | Meteorite powder refluxed in glass flask or in degassed glass tube using 1%, 5% or 10% KOH/MeOH for 3 h. Water added to extract for DCM or benzene partition. Aqueous fraction taken to dryness, re-dissolved in water, acidified, and DCM-extracted for GC-MS analysis | Yuen and Kvenvolden (1973) [ | |
| Methyl esters | Meteorite powder refluxed in 6% KOH/MeOH for 3 h. Aqueous portion separated by decantation, solution taken to dryness, acidification, filtration, and diethyl ether-extraction for GC and GC-IRMS analyses | Lawless and Yuen (1979) [ | |
| Underivatized MCAs | Meteorite chips put in degassed flask with deionized water, disaggregation of chips by freeze-thaw cycles and sonication. Aqueous portion separated, neutralized, taken to dryness by rotary evaporation, re-dissolved in water, and vacuum distilled for suppression chromatography and GC-IRMS analyses | Yuen et al. (1984) [ | |
| Underivatized MCAs | No details provided about extraction protocol. Analysis of MCAs performed using ion exclusion chromatography | Briscoe and Moore (1993) [ | |
| Underivatized MCAs | Meteorite chips or powder extracted in degassed glass tube or round-bottom flask with ultrapure deionized or double-distilled water at 100 or 110 °C for 6 or 24 h. Aqueous extract taken to pH > 10, concentrated by rotary evaporation, acidified for SPME, GC-FID, GC-MS and GC-IRMS analyses | Huang et al. (2005) [ | |
| Underivatized MCAs | Meteorite powder put in degassed glass vial with triple-distilled water at 100 °C and intermittent sonication for 20 h. Aqueous extract taken to pH = 11.5, concentrated by rotary evaporation, acidified, cryogenically transferred and DCM-extracted for GC-MS analysis | Pizzarello et al. (2008) [ | |
| Underivatized MCAs | Meteorite powder put in degassed glass vial with distilled water at 100 °C for 20 h or at 25 °C for 24 h, followed by a 100 °C 24 h extraction. Aqueous portions separated after each extraction period were made acid, cryogenically transferred, acidified, and DCM-extracted for GC-MS analysis | Monroe and Pizzarello (2011) [ | |
| Underivatized MCAs | Meteorite powder put in degassed glass vial with distilled water at 100 °C for 20 h. Aqueous portions separated after each extraction period were made acid, cryogenically transferred, acidified, and DCM-extracted for GC-MS analysis | Pizzarello et al. (2012) [ | |
| Underivatized MCAs and as | Meteorite powder put in Teflon tube containing aqueous 1 N NaOH, 30 min sonication, stirring for 2 h at room temperature. Acidification of aqueous extract and DCM-partition for GC-FID and GCMS underivatized analyses, and esterification for GC-MRM and GC-IRMS analyses | Aponte et al. (2014) [ | |
| Derivatized as ( | Meteorite powder extracted in distilled water at 100 °C for 24 h. Aqueous portion separated, MgCl2 solution added, and solution taken to dryness by centrifugal evaporation. Acid-catalyzed esterification of residue for GC-MS and GC-IRMS analyses | Aponte et al. (2019) [ |
Compound-specific analyses of meteoritic aldehydes and ketones.
| Analyzed as | Extraction and Analytical Methodology | Author (Year Published) | Meteorites Analyzed |
|---|---|---|---|
| Underivatized carbonyls for GC-MS | Meteorite powder extracted in water at 120 °C for 4 days. Aqueous portion removed after centrifugation for head space GC-MS of volatile species, followed by derivatization for colorimetric analyses, and removal of derivatization tag for GC-MS re-analysis | Jungclaus et al. (1976) [ | |
| PFBHA derivatives (oximes) | Meteorite powders extracted in water at 80 °C for 2 h, then at 80 °C for 20 h, then at 100 °C 24 h. Aqueous portions separated after each extraction period were derivatized (35 °C, 2 h), then acidified. PFBHA derivatives were extracted from solution in hexane for GC-MS analysis | Pizzarello and Holmes (2009) [ | |
| PFBHA derivatives (oximes) | Meteorite powders extracted in water at 25 °C for 24 h, followed by a 100 °C 24 h extraction. Aqueous portions separated after each extraction period were derivatized (35 °C, 2 h), acidified, and extracted using hexane for GC-MS and GC-IRMS analyses | Monroe and Pizzarello (2011) [ | |
| PFBHA derivatives (oximes) | Meteorite powders extracted in water at 100 °C for 24 h. Aqueous portions were derivatized (35 °C, 2 h), acidified, and extracted using hexane for GC-MS analysis | Pizzarello et al. (2012) [ | |
| PFBHA derivatives (oximes) | Meteorite powders extracted in water at 100 °C for 24 h. Aqueous portions were derivatized (room temperature, 24 h), acidified, and extracted using DCM for GC-MS and GC-IRMS analyses | Simkus et al. (2019) [ | |
| DMB derivatives (acetals) | Meteorite powders extracted in DCM at 100 °C for 24 h. DCM portions were derivatized for GC-MS and GC-IRMS analyses | Aponte et al. (2019) [ |
MBTH: 3-methyl-2-benzothiazolone hydrazone hydrochloride; PFBHA: 2,3,4,5,6-pentafluorobenzyl hydroxylamine; DMB: (S,S)-(–)-1,4-dimethoxy-2,3-butanediol.
Figure 3Average percent recoveries (%) of amino acids extracted from Nile Delta deep-sea sediment (see Glavin et al., 1999 [49] for sample source information), relative to the standard amino acid extraction protocol (100 °C water extraction for 24 h, followed by 6 M HCl hydrolysis at 100 °C for 24 h). (A) Effects of varying temperature (100 °C and 150 °C) and duration (15 min–48 h) for the hot-water extraction. Increasing the duration and the temperature of the water extraction results in a continuous increase in amino acid recovery. (B) Effects of varying temperature (100 °C and 150 °C) and duration (15 min–24 h) for 6 M HCl hydrolysis. In most cases, increased temperature and duration results in higher amino acid recoveries; however, the duration of the hydrolysis step is generally kept at 3 h to avoid potential amino acid racemization [89].
Scheme 2Schematic of the (A) trifluoroacetic acid (TFA) derivatization reaction and (B) o-phthalaldehyde-N-acetyl-l-cysteine (OPA/NAC) derivatization reaction commonly used for analyses of meteoritic amino acids.
Figure 4Compositional heterogeneity among Murchison meteorite specimens. Abundances (nmol/g) of non-proteinogenic and proteinogenic amino acids in three Murchison specimens (United States National Museum (USNM) 6650 [50]; USNM 5453 [122]; specimen from the Field Museum of Natural History, Chicago [125]) analyzed using the same methodology (o-phthalaldehyde-N-acetyl-l-cysteine (OPA/NAC) derivatization and high-performance liquid chromatography coupled to a UV fluorescence detector (HPLC-FD) and liquid chromatography (LC)- time-of-flight mass spectrometer (ToF-MS)) within the same laboratory facility. Abundances reported in ng/g [50,122] were converted to nmol/g values for cross-comparison. α-AIB: α-aminoisobutyric acid; Ival: isovaline; γ-ABA: γ-amino-n-butyric acid; β-Ala: β-alanine; α-ABA: α-amino-n-butyric acid; β-ABA: β-amino-n-butyric acid; Asp: aspartic acid; Ser: serine; Glu: glutamic acid; Gly: glycine; Ala: alanine; Val: valine.