Literature DB >> 31167101

Controlling Matter at the Molecular Scale with DNA Circuits.

Dominic Scalise1, Rebecca Schulman1,2.   

Abstract

In recent years, a diverse set of mechanisms have been developed that allow DNA strands with specific sequences to sense information in their environment and to control material assembly, disassembly, and reconfiguration. These sequences could serve as the inputs and outputs for DNA computing circuits, enabling DNA circuits to act as chemical information processors to program complex behavior in chemical and material systems. This review describes processes that can be sensed and controlled within such a paradigm. Specifically, there are interfaces that can release strands of DNA in response to chemical signals, wavelengths of light, pH, or electrical signals, as well as DNA strands that can direct the self-assembly and dynamic reconfiguration of DNA nanostructures, regulate particle assemblies, control encapsulation, and manipulate materials including DNA crystals, hydrogels, and vesicles. These interfaces have the potential to enable chemical circuits to exert algorithmic control over responsive materials, which may ultimately lead to the development of materials that grow, heal, and interact dynamically with their environments.

Keywords:  DNA strand displacement; aptamers; chemical computing; programmable matter; structural DNA nanotechnology; synthetic biology

Mesh:

Substances:

Year:  2019        PMID: 31167101     DOI: 10.1146/annurev-bioeng-060418-052357

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  9 in total

1.  Purification of Self-Assembled DNA Tetrahedra Using Gel Electrophoresis.

Authors:  Akul Patel; Vibhav Valsangkar; Ken Halvorsen; Arun Richard Chandrasekaran
Journal:  Curr Protoc       Date:  2022-09

2.  DNA Strand-Displacement Temporal Logic Circuits.

Authors:  Anna P Lapteva; Namita Sarraf; Lulu Qian
Journal:  J Am Chem Soc       Date:  2022-07-02       Impact factor: 16.383

3.  Target induced framework nucleic acid nanomachine with doxorubicin-spherical nucleic acid tags for electrochemical determination of human telomerase activity.

Authors:  Yong Shen; Jiaomei Gong; Qingxia Xu; Lili Zhou; Jiahe Sheng
Journal:  Mikrochim Acta       Date:  2020-01-06       Impact factor: 5.833

Review 4.  Programmable protein circuit design.

Authors:  Zibo Chen; Michael B Elowitz
Journal:  Cell       Date:  2021-04-12       Impact factor: 41.582

5.  High-Surety Isothermal Amplification and Detection of SARS-CoV-2.

Authors:  Sanchita Bhadra; Timothy E Riedel; Simren Lakhotia; Nicholas D Tran; Andrew D Ellington
Journal:  mSphere       Date:  2021-05-19       Impact factor: 4.389

6.  Programming and simulating chemical reaction networks on a surface.

Authors:  Samuel Clamons; Lulu Qian; Erik Winfree
Journal:  J R Soc Interface       Date:  2020-05-27       Impact factor: 4.118

7.  Sequence-selective purification of biological RNAs using DNA nanoswitches.

Authors:  Lifeng Zhou; Andrew Hayden; Arun Richard Chandrasekaran; Javier Vilcapoma; Cassandra Cavaliere; Paromita Dey; Song Mao; Jia Sheng; Bijan K Dey; Prashanth Rangan; Ken Halvorsen
Journal:  Cell Rep Methods       Date:  2021-12-13

8.  A Loser-Take-All DNA Circuit.

Authors:  Kellen R Rodriguez; Namita Sarraf; Lulu Qian
Journal:  ACS Synth Biol       Date:  2021-10-08       Impact factor: 5.249

9.  A kinetically controlled platform for ligand-oligonucleotide transduction.

Authors:  Qiu-Long Zhang; Liang-Liang Wang; Yan Liu; Jiao Lin; Liang Xu
Journal:  Nat Commun       Date:  2021-08-02       Impact factor: 14.919

  9 in total

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