Literature DB >> 33848464

Programmable protein circuit design.

Zibo Chen1, Michael B Elowitz2.   

Abstract

A fundamental challenge in synthetic biology is to create molecular circuits that can program complex cellular functions. Because proteins can bind, cleave, and chemically modify one another and interface directly and rapidly with endogenous pathways, they could extend the capabilities of synthetic circuits beyond what is possible with gene regulation alone. However, the very diversity that makes proteins so powerful also complicates efforts to harness them as well-controlled synthetic circuit components. Recent work has begun to address this challenge, focusing on principles such as orthogonality and composability that permit construction of diverse circuit-level functions from a limited set of engineered protein components. These approaches are now enabling the engineering of circuits that can sense, transmit, and process information; dynamically control cellular behaviors; and enable new therapeutic strategies, establishing a powerful paradigm for programming biology.
Copyright © 2021 Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 33848464      PMCID: PMC8087657          DOI: 10.1016/j.cell.2021.03.007

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  155 in total

1.  Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.

Authors:  Gregory T Kapp; Sen Liu; Amelie Stein; Derek T Wong; Attila Reményi; Brian J Yeh; James S Fraser; Jack Taunton; Wendell A Lim; Tanja Kortemme
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-07       Impact factor: 11.205

2.  Stability of 100 homo and heterotypic coiled-coil a-a' pairs for ten amino acids (A, L, I, V, N, K, S, T, E, and R).

Authors:  Asha Acharya; Vikas Rishi; Charles Vinson
Journal:  Biochemistry       Date:  2006-09-26       Impact factor: 3.162

Review 3.  Designing cell function: assembly of synthetic gene circuits for cell biology applications.

Authors:  Mingqi Xie; Martin Fussenegger
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

4.  Studying G protein-coupled receptor activation using split-tobacco etch virus assays.

Authors:  Minou S Djannatian; Sabrina Galinski; Tobias M Fischer; Moritz J Rossner
Journal:  Anal Biochem       Date:  2011-02-02       Impact factor: 3.365

5.  A compact synthetic pathway rewires cancer signaling to therapeutic effector release.

Authors:  Hokyung K Chung; Xinzhi Zou; Bryce T Bajar; Veronica R Brand; Yunwen Huo; Javier F Alcudia; James E Ferrell; Michael Z Lin
Journal:  Science       Date:  2019-05-03       Impact factor: 47.728

Review 6.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

7.  The incoherent feedforward loop can provide fold-change detection in gene regulation.

Authors:  Lea Goentoro; Oren Shoval; Marc W Kirschner; Uri Alon
Journal:  Mol Cell       Date:  2009-12-11       Impact factor: 17.970

8.  Rewiring human cellular input-output using modular extracellular sensors.

Authors:  Kelly A Schwarz; Nichole M Daringer; Taylor B Dolberg; Joshua N Leonard
Journal:  Nat Chem Biol       Date:  2016-12-12       Impact factor: 15.040

9.  Design of Tunable Oscillatory Dynamics in a Synthetic NF-κB Signaling Circuit.

Authors:  Zhi-Bo Zhang; Qiu-Yue Wang; Yu-Xi Ke; Shi-Yu Liu; Jian-Qi Ju; Wendell A Lim; Chao Tang; Ping Wei
Journal:  Cell Syst       Date:  2017-10-25       Impact factor: 10.304

10.  Phosphoregulated orthogonal signal transduction in mammalian cells.

Authors:  Leo Scheller; Marc Schmollack; Adrian Bertschi; Maysam Mansouri; Pratik Saxena; Martin Fussenegger
Journal:  Nat Commun       Date:  2020-06-18       Impact factor: 14.919

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  4 in total

Review 1.  Proteome expansion in the Potyviridae evolutionary radiation.

Authors:  Fabio Pasin; José-Antonio Daròs; Ioannis E Tzanetakis
Journal:  FEMS Microbiol Rev       Date:  2022-07-01       Impact factor: 15.177

2.  Protease-controlled secretion and display of intercellular signals.

Authors:  Alexander E Vlahos; Jeewoo Kang; Carlos A Aldrete; Ronghui Zhu; Lucy S Chong; Michael B Elowitz; Xiaojing J Gao
Journal:  Nat Commun       Date:  2022-02-17       Impact factor: 17.694

Review 3.  Breadth and Specificity in Pleiotropic Protein Kinase A Activity and Environmental Responses.

Authors:  Rachel A Kocik; Audrey P Gasch
Journal:  Front Cell Dev Biol       Date:  2022-02-16

4.  Cellular Computational Logic Using Toehold Switches.

Authors:  Seungdo Choi; Geonhu Lee; Jongmin Kim
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

  4 in total

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