Literature DB >> 31140688

A High-Throughput Mass Spectrometric Enzyme Activity Assay Enabling the Discovery of Cytochrome P450 Biocatalysts.

Tristan de Rond1,2,3, Jian Gao4, Amin Zargar2, Markus de Raad4,5, Jack Cunha2, Trent R Northen2,4,5, Jay D Keasling1,2,6,7,8.   

Abstract

Assaying for enzymatic activity is a persistent bottleneck in biocatalyst and drug development. Existing high-throughput assays for enzyme activity tend to be applicable only to a narrow range of biochemical transformations, whereas universal enzyme characterization methods usually require chromatography to determine substrate turnover, greatly diminishing throughput. We present an enzyme activity assay that allows the high-throughput mass-spectrometric detection of enzyme activity in complex matrices without the need for a chromatographic step. This technology, which we call probing enzymes with click-assisted NIMS (PECAN), can detect the activity of medically and biocatalytically significant cytochrome P450s in cell lysate, microsomes, and bacteria. Using this approach, a cytochrome P450BM3 mutant library was successfully screened for the ability to catalyze the oxidation of the sesquiterpene valencene.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biocatalysis; cytochrome P450; enzyme assays; high-throughput screening; mass spectrometry

Year:  2019        PMID: 31140688      PMCID: PMC6640108          DOI: 10.1002/anie.201901782

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  41 in total

1.  A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays.

Authors: 
Journal:  J Biomol Screen       Date:  1999

2.  Directed evolution of the fatty-acid hydroxylase P450 BM-3 into an indole-hydroxylating catalyst.

Authors:  Q S Li; U Schwaneberg; P Fischer; R D Schmid
Journal:  Chemistry       Date:  2000-05-02       Impact factor: 5.236

3.  A stepwise huisgen cycloaddition process: copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes.

Authors:  Vsevolod V Rostovtsev; Luke G Green; Valery V Fokin; K Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2002-07-15       Impact factor: 15.336

4.  Nootkatone is a repellent for Formosan subterranean termite (Coptotermes formosanus).

Authors:  B C Zhu; G Henderson; F Chen; L Maistrello; R A Laine
Journal:  J Chem Ecol       Date:  2001-03       Impact factor: 2.626

5.  Engineered alkane-hydroxylating cytochrome P450(BM3) exhibiting nativelike catalytic properties.

Authors:  Rudi Fasan; Mike M Chen; Nathan C Crook; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 6.  Luminogenic cytochrome P450 assays.

Authors:  James J Cali; Dongping Ma; Mary Sobol; Daniel J Simpson; Susan Frackman; Troy D Good; William J Daily; David Liu
Journal:  Expert Opin Drug Metab Toxicol       Date:  2006-08       Impact factor: 4.481

7.  Biotransformation of the sesquiterpene (+)-valencene by cytochrome P450cam and P450BM-3.

Authors:  Rebecca J Sowden; Samina Yasmin; Nicholas H Rees; Stephen G Bell; Luet-Lok Wong
Journal:  Org Biomol Chem       Date:  2004-11-18       Impact factor: 3.876

8.  Clathrate nanostructures for mass spectrometry.

Authors:  Trent R Northen; Oscar Yanes; Michael T Northen; Dena Marrinucci; Winnie Uritboonthai; Junefredo Apon; Stephen L Golledge; Anders Nordström; Gary Siuzdak
Journal:  Nature       Date:  2007-10-25       Impact factor: 49.962

9.  A nanostructure-initiator mass spectrometry-based enzyme activity assay.

Authors:  Trent R Northen; Jinq-Chyi Lee; Linh Hoang; Jason Raymond; Der-Ren Hwang; Steven M Yannone; Chi-Huey Wong; Gary Siuzdak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-04       Impact factor: 11.205

10.  Regio- and enantioselective alkane hydroxylation with engineered cytochromes P450 BM-3.

Authors:  Matthew W Peters; Peter Meinhold; Anton Glieder; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2003-11-05       Impact factor: 15.419

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  9 in total

1.  A Growth-Based, High-Throughput Selection Platform Enables Remodeling of 4-Hydroxybenzoate Hydroxylase Active Site.

Authors:  Sarah Maxel; Derek Aspacio; Edward King; Linyue Zhang; Ana Paula Acosta; Han Li
Journal:  ACS Catal       Date:  2020-06-05       Impact factor: 13.084

Review 2.  Engineering natural and noncanonical nicotinamide cofactor-dependent enzymes: design principles and technology development.

Authors:  Edward King; Sarah Maxel; Han Li
Journal:  Curr Opin Biotechnol       Date:  2020-09-18       Impact factor: 9.740

Review 3.  A roadmap for metagenomic enzyme discovery.

Authors:  Serina L Robinson; Jörn Piel; Shinichi Sunagawa
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

4.  Glycosyltransferases: Mining, engineering and applications in biosynthesis of glycosylated plant natural products.

Authors:  Bo He; Xue Bai; Yumeng Tan; Wentao Xie; Yan Feng; Guang-Yu Yang
Journal:  Synth Syst Biotechnol       Date:  2022-02-02

5.  Directed evolution of a cyclodipeptide synthase with new activities via label-free mass spectrometric screening.

Authors:  Songya Zhang; Jing Zhu; Shuai Fan; Wenhao Xie; Zhaoyong Yang; Tong Si
Journal:  Chem Sci       Date:  2022-06-02       Impact factor: 9.969

6.  A phosphite-based screening platform for identification of enzymes favoring nonnatural cofactors.

Authors:  Yuxue Liu; Zhuoya Li; Xiaojia Guo; Xueying Wang; Zongbao K Zhao
Journal:  Sci Rep       Date:  2022-07-21       Impact factor: 4.996

Review 7.  Perfluorocarbons in Chemical Biology.

Authors:  Margeaux A Miller; Ellen M Sletten
Journal:  Chembiochem       Date:  2020-08-05       Impact factor: 3.164

8.  An integrated screening system for the selection of exemplary substrates for natural and engineered cytochrome P450s.

Authors:  Naoki Kanoh; Ayano Kawamata-Asano; Kana Suzuki; Yusuke Takahashi; Takeshi Miyazawa; Takemichi Nakamura; Takashi Moriya; Hiroyuki Hirano; Hiroyuki Osada; Yoshiharu Iwabuchi; Shunji Takahashi
Journal:  Sci Rep       Date:  2019-12-02       Impact factor: 4.379

9.  UPLC-MS/MS Method for Analysis of Endocannabinoid and Related Lipid Metabolism in Mouse Mucosal Tissue.

Authors:  Mark B Wiley; Pedro A Perez; Donovan A Argueta; Bryant Avalos; Courtney P Wood; Nicholas V DiPatrizio
Journal:  Front Physiol       Date:  2021-07-14       Impact factor: 4.566

  9 in total

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