Literature DB >> 34295569

A Growth-Based, High-Throughput Selection Platform Enables Remodeling of 4-Hydroxybenzoate Hydroxylase Active Site.

Sarah Maxel1, Derek Aspacio1, Edward King2, Linyue Zhang1, Ana Paula Acosta1, Han Li1.   

Abstract

We report an aerobic, growth-based selection platform founded on NADP(H) redox balance restoration in Escherichia coli, and we demonstrate its application in the high-throughput evolution of an oxygenase. A single round of selection followed by a facile growth assay enabled Pseudomonas aeruginosa 4-hydroxybenzoate hydroxylase (PobA) to efficiently hydroxylate both 4-hydroxybenzoic acid (4-HBA) and 3,4-dihydroxybenzoic acid (3,4-DHBA), two consecutive steps in gallic acid biosynthesis. Structural modeling suggests precise reorganization of active site hydrogen bond network, which is difficult to obtain without deep navigation of combinatorial sequence space. We envision universal application of this selection platform in engineering NADPH-dependent oxidoreductases.

Entities:  

Keywords:  3,4-dihydroxybenzoic acid; 4-hydroxybenzoate hydroxylase; NADPH-dependent monooxygenase; directed evolution; redox balance

Year:  2020        PMID: 34295569      PMCID: PMC8294663          DOI: 10.1021/acscatal.0c01892

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  21 in total

1.  Engineering cytochrome P450 BM-3 for oxidation of polycyclic aromatic hydrocarbons.

Authors:  Q S Li; J Ogawa; R D Schmid; S Shimizu
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

Review 2.  P450(BM3) (CYP102A1): connecting the dots.

Authors:  Christopher J C Whitehouse; Stephen G Bell; Luet-Lok Wong
Journal:  Chem Soc Rev       Date:  2011-10-18       Impact factor: 54.564

3.  Stress-induced evolution of Escherichia coli points to original concepts in respiratory cofactor selectivity.

Authors:  Clément Auriol; Gwénaëlle Bestel-Corre; Jean-Baptiste Claude; Philippe Soucaille; Isabelle Meynial-Salles
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

4.  Reactive Oxygen Species Production by Escherichia coli Respiratory Complex I.

Authors:  Klaudia Frick; Marius Schulte; Thorsten Friedrich
Journal:  Biochemistry       Date:  2015-04-28       Impact factor: 3.162

5.  A High-Throughput Mass Spectrometric Enzyme Activity Assay Enabling the Discovery of Cytochrome P450 Biocatalysts.

Authors:  Tristan de Rond; Jian Gao; Amin Zargar; Markus de Raad; Jack Cunha; Trent R Northen; Jay D Keasling
Journal:  Angew Chem Int Ed Engl       Date:  2019-06-13       Impact factor: 15.336

6.  A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3).

Authors:  Jeffrey A Dietrich; Yasuo Yoshikuni; Karl J Fisher; Frank X Woolard; Denise Ockey; Derek J McPhee; Neil S Renninger; Michelle C Y Chang; David Baker; Jay D Keasling
Journal:  ACS Chem Biol       Date:  2009-04-17       Impact factor: 5.100

7.  Catalytic function of tyrosine residues in para-hydroxybenzoate hydroxylase as determined by the study of site-directed mutants.

Authors:  B Entsch; B A Palfey; D P Ballou; V Massey
Journal:  J Biol Chem       Date:  1991-09-15       Impact factor: 5.157

8.  Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production.

Authors:  Jorge Alonso-Gutierrez; Rossana Chan; Tanveer S Batth; Paul D Adams; Jay D Keasling; Christopher J Petzold; Taek Soon Lee
Journal:  Metab Eng       Date:  2013-05-29       Impact factor: 9.783

9.  CipA-mediating enzyme self-assembly to enhance the biosynthesis of pyrogallol in Escherichia coli.

Authors:  Yi-Xin Huo; Huiyong Ren; Huan Yu; Luyao Zhao; Shengzhu Yu; Yajun Yan; Zhenya Chen
Journal:  Appl Microbiol Biotechnol       Date:  2018-09-22       Impact factor: 4.813

10.  Development of a High-Throughput, In Vivo Selection Platform for NADPH-Dependent Reactions Based on Redox Balance Principles.

Authors:  Linyue Zhang; Edward King; Ray Luo; Han Li
Journal:  ACS Synth Biol       Date:  2018-06-29       Impact factor: 5.110

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  5 in total

1.  A high-throughput visual screening method for p-hydroxybenzoate hydroxylase to increase phenolic compounds biosynthesis.

Authors:  Zhenya Chen; Tongtong Chen; Shengzhu Yu; Yi-Xin Huo
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-05-02

Review 2.  Melatonin biosynthesis pathways in nature and its production in engineered microorganisms.

Authors:  Xiaotong Xie; Dongqin Ding; Danyang Bai; Yaru Zhu; Wei Sun; Yumei Sun; Dawei Zhang
Journal:  Synth Syst Biotechnol       Date:  2022-01-12

3.  Versatile selective evolutionary pressure using synthetic defect in universal metabolism.

Authors:  Lara Sellés Vidal; James W Murray; John T Heap
Journal:  Nat Commun       Date:  2021-11-25       Impact factor: 14.919

4.  A phosphite-based screening platform for identification of enzymes favoring nonnatural cofactors.

Authors:  Yuxue Liu; Zhuoya Li; Xiaojia Guo; Xueying Wang; Zongbao K Zhao
Journal:  Sci Rep       Date:  2022-07-21       Impact factor: 4.996

5.  Directed evolution of phosphite dehydrogenase to cycle noncanonical redox cofactors via universal growth selection platform.

Authors:  Linyue Zhang; Edward King; William B Black; Christian M Heckmann; Allison Wolder; Youtian Cui; Francis Nicklen; Justin B Siegel; Ray Luo; Caroline E Paul; Han Li
Journal:  Nat Commun       Date:  2022-08-26       Impact factor: 17.694

  5 in total

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