Literature DB >> 27908688

Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution.

Hemanshu Mundhada1, Jose M Seoane1, Konstantin Schneider1, Anna Koza1, Hanne B Christensen1, Tobias Klein1, Patrick V Phaneuf2, Markus Herrgard1, Adam M Feist3, Alex T Nielsen4.   

Abstract

L-serine is a promising building block biochemical with a high theoretical production yield from glucose. Toxicity of L-serine is however prohibitive for high-titer production in E. coli. Here, E. coli lacking L-serine degradation pathways was evolved for improved tolerance by gradually increasing L-serine concentration from 3 to 100g/L using adaptive laboratory evolution (ALE). Genome sequencing of isolated clones revealed multiplication of genetic regions, as well as mutations in thrA, thereby showing a potential mechanism of serine inhibition. Additional mutations were evaluated by MAGE combined with amplicon sequencing, revealing role of rho, lrp, pykF, eno, and rpoB on tolerance and fitness in minimal medium. Production using the tolerant strains resulted in 37g/L of L-serine with a 24% mass yield. The resulting titer is similar to the highest production reported for any organism thereby highlighting the potential of ALE for industrial biotechnology.
Copyright © 2016 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Adaptive laboratory evolution (ALE); E. coli; Fermentation; Serine production; Serine tolerance

Mesh:

Substances:

Year:  2016        PMID: 27908688     DOI: 10.1016/j.ymben.2016.11.008

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  23 in total

1.  Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-09-23       Impact factor: 9.783

2.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Authors:  Sungho Jang; Minsun Kim; Jaeseong Hwang; Gyoo Yeol Jung
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

3.  Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies.

Authors:  Troy E Sandberg; Colton J Lloyd; Bernhard O Palsson; Adam M Feist
Journal:  Appl Environ Microbiol       Date:  2017-06-16       Impact factor: 4.792

Review 4.  The developing toolkit of continuous directed evolution.

Authors:  Mary S Morrison; Christopher J Podracky; David R Liu
Journal:  Nat Chem Biol       Date:  2020-05-22       Impact factor: 15.040

5.  Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-18       Impact factor: 11.205

Review 6.  The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Authors:  Troy E Sandberg; Michael J Salazar; Liam L Weng; Bernhard O Palsson; Adam M Feist
Journal:  Metab Eng       Date:  2019-08-08       Impact factor: 9.783

7.  Characterization of Highly Ferulate-Tolerant Acinetobacter baylyi ADP1 Isolates by a Rapid Reverse Engineering Method.

Authors:  Jin Luo; Emily A McIntyre; Stacy R Bedore; Ville Santala; Ellen L Neidle; Suvi Santala
Journal:  Appl Environ Microbiol       Date:  2021-11-17       Impact factor: 5.005

8.  Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity.

Authors:  Patrick V Phaneuf; James T Yurkovich; David Heckmann; Muyao Wu; Troy E Sandberg; Zachary A King; Justin Tan; Bernhard O Palsson; Adam M Feist
Journal:  BMC Genomics       Date:  2020-07-25       Impact factor: 3.969

9.  An autoinducible trp-T7 expression system for production of proteins and biochemicals in Escherichia coli.

Authors:  Jenny Landberg; Hemanshu Mundhada; Alex Toftgaard Nielsen
Journal:  Biotechnol Bioeng       Date:  2020-02-18       Impact factor: 4.530

10.  Reframing gene essentiality in terms of adaptive flexibility.

Authors:  Gabriela I Guzmán; Connor A Olson; Ying Hefner; Patrick V Phaneuf; Edward Catoiu; Lais B Crepaldi; Lucas Goldschmidt Micas; Bernhard O Palsson; Adam M Feist
Journal:  BMC Syst Biol       Date:  2018-12-17
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