Literature DB >> 31112905

Spatial chromatin organization and gene regulation at the nuclear lamina.

Isabel Guerreiro1, Jop Kind2.   

Abstract

The nuclear lamina (NL) consists of a thin meshwork of lamins and associated proteins that lines the inner nuclear membrane (INM). In metazoan nuclei, a large proportion of the genome contacts the NL in broad lamina-associated domains (LADs). Contacts of the NL with the genome are believed to aid the spatial organization of chromosomes and contribute to the regulation of transcription. Here, we will focus on recent insights in the structural organization of the genome at the NL and the role of this organization in the regulation of gene expression.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31112905      PMCID: PMC7100903          DOI: 10.1016/j.gde.2019.04.008

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  65 in total

1.  G9a selectively represses a class of late-replicating genes at the nuclear periphery.

Authors:  Tomoki Yokochi; Kristina Poduch; Tyrone Ryba; Junjie Lu; Ichiro Hiratani; Makoto Tachibana; Yoichi Shinkai; David M Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-04       Impact factor: 11.205

2.  Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.

Authors:  Benjamin D Towbin; Cristina González-Aguilera; Ragna Sack; Dimos Gaidatzis; Véronique Kalck; Peter Meister; Peter Askjaer; Susan M Gasser
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

3.  A-type Lamins Form Distinct Filamentous Networks with Differential Nuclear Pore Complex Associations.

Authors:  Wei Xie; Alexandre Chojnowski; Thomas Boudier; John S Y Lim; Sohail Ahmed; Zheng Ser; Colin Stewart; Brian Burke
Journal:  Curr Biol       Date:  2016-09-15       Impact factor: 10.834

4.  Histones H3/H4 form a tight complex with the inner nuclear membrane protein LBR and heterochromatin protein 1.

Authors:  H Polioudaki; N Kourmouli; V Drosou; A Bakou; P A Theodoropoulos; P B Singh; T Giannakouros; S D Georgatos
Journal:  EMBO Rep       Date:  2001-09-24       Impact factor: 8.807

5.  Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.

Authors:  Guillaume J Filion; Joke G van Bemmel; Ulrich Braunschweig; Wendy Talhout; Jop Kind; Lucas D Ward; Wim Brugman; Inês J de Castro; Ron M Kerkhoven; Harmen J Bussemaker; Bas van Steensel
Journal:  Cell       Date:  2010-09-30       Impact factor: 41.582

6.  Initial genomics of the human nucleolus.

Authors:  Attila Németh; Ana Conesa; Javier Santoyo-Lopez; Ignacio Medina; David Montaner; Bálint Péterfia; Irina Solovei; Thomas Cremer; Joaquin Dopazo; Gernot Längst
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

7.  Specific nuclear envelope transmembrane proteins can promote the location of chromosomes to and from the nuclear periphery.

Authors:  Nikolaj Zuleger; Shelagh Boyle; David A Kelly; Jose I de las Heras; Vassiliki Lazou; Nadia Korfali; Dzmitry G Batrakou; K Natalie Randles; Glenn E Morris; David J Harrison; Wendy A Bickmore; Eric C Schirmer
Journal:  Genome Biol       Date:  2013-02-15       Impact factor: 13.583

8.  Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence.

Authors:  Christelle Lenain; Carolyn A de Graaf; Ludo Pagie; Nils L Visser; Marcel de Haas; Sandra S de Vries; Daniel Peric-Hupkes; Bas van Steensel; Daniel S Peeper
Journal:  Genome Res       Date:  2017-09-15       Impact factor: 9.043

9.  Genome-wide maps of nuclear lamina interactions in single human cells.

Authors:  Jop Kind; Ludo Pagie; Sandra S de Vries; Leila Nahidiazar; Siddharth S Dey; Magda Bienko; Ye Zhan; Bryan Lajoie; Carolyn A de Graaf; Mario Amendola; Geoffrey Fudenberg; Maxim Imakaev; Leonid A Mirny; Kees Jalink; Job Dekker; Alexander van Oudenaarden; Bas van Steensel
Journal:  Cell       Date:  2015-09-10       Impact factor: 41.582

10.  The large fraction of heterochromatin in Drosophila neurons is bound by both B-type lamin and HP1a.

Authors:  Alexey V Pindyurin; Artem A Ilyin; Anton V Ivankin; Mikhail V Tselebrovsky; Valentina V Nenasheva; Elena A Mikhaleva; Ludo Pagie; Bas van Steensel; Yuri Y Shevelyov
Journal:  Epigenetics Chromatin       Date:  2018-11-01       Impact factor: 4.954

View more
  13 in total

Review 1.  Viewing Nuclear Architecture through the Eyes of Nocturnal Mammals.

Authors:  Yana Feodorova; Martin Falk; Leonid A Mirny; Irina Solovei
Journal:  Trends Cell Biol       Date:  2020-01-22       Impact factor: 20.808

Review 2.  Regulation and dysregulation of spatial chromatin structure in the central nervous system.

Authors:  Yuki Fujita
Journal:  Anat Sci Int       Date:  2021-01-03       Impact factor: 1.741

3.  Nuclear pore complex-mediated gene expression in Arabidopsis thaliana.

Authors:  Kentaro Tamura
Journal:  J Plant Res       Date:  2020-03-13       Impact factor: 2.629

4.  CTCF supports preferentially short lamina-associated domains.

Authors:  Lukasz Stanislaw Kaczmarczyk; Nehora Levi; Tamar Segal; Mali Salmon-Divon; Gabi Gerlitz
Journal:  Chromosome Res       Date:  2022-03-03       Impact factor: 5.239

Review 5.  Ageing and rejuvenation of tissue stem cells and their niches.

Authors:  Anne Brunet; Margaret A Goodell; Thomas A Rando
Journal:  Nat Rev Mol Cell Biol       Date:  2022-07-20       Impact factor: 113.915

Review 6.  Brain Cell Type-Specific Nuclear Proteomics Is Imperative to Resolve Neurodegenerative Disease Mechanisms.

Authors:  Ruth S Nelson; Eric B Dammer; Juliet V Santiago; Nicholas T Seyfried; Srikant Rangaraju
Journal:  Front Neurosci       Date:  2022-06-16       Impact factor: 5.152

Review 7.  Nuclear architecture as an intrinsic regulator of Drosophila female germline stem cell maintenance.

Authors:  Tingting Duan; Nicole Green; Tina L Tootle; Pamela K Geyer
Journal:  Curr Opin Insect Sci       Date:  2020-01-30       Impact factor: 5.186

8.  Nuclear F-actin counteracts nuclear deformation and promotes fork repair during replication stress.

Authors:  Noa Lamm; Mark N Read; Max Nobis; David Van Ly; Scott G Page; V Pragathi Masamsetti; Paul Timpson; Maté Biro; Anthony J Cesare
Journal:  Nat Cell Biol       Date:  2020-11-30       Impact factor: 28.824

Review 9.  Nuclear envelope remodelling during mitosis.

Authors:  Gautam Dey; Buzz Baum
Journal:  Curr Opin Cell Biol       Date:  2021-01-06       Impact factor: 8.382

Review 10.  Recent progress in the mechanistic understanding of NET formation in neutrophils.

Authors:  Ming-Lin Liu; Xing Lyu; Victoria P Werth
Journal:  FEBS J       Date:  2021-06-11       Impact factor: 5.622

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.