Literature DB >> 33392926

Regulation and dysregulation of spatial chromatin structure in the central nervous system.

Yuki Fujita1,2.   

Abstract

Chromatin exists as a non-linear, "three-dimensional" structure in the nuclear space. The dynamic alteration of the chromatin structure leads to transcriptional changes during the formation of the neuronal network. Several studies providing evidence for the link between the dysregulation of spatial chromatin architecture and developmental disorders have accumulated. Therefore, we studied and reviewed the regulation and dysregulation of 3D genome organization in the central nervous system, with a special focus on the cohesin complex that is crucial for the formation of the chromatin loop structure. This review summarizes the function and mechanisms of spatial chromatin architecture during the development of the central nervous system. We discuss the link between the disturbances in the 3D chromatin structure and the diseases of the central nervous system. Finally, we discuss how the knowledge of 3D genome organization may lead to further advances in diagnosis and therapy for the diseases of the central nervous system.

Entities:  

Keywords:  Brain; Central nervous system; Chromatin; Disease; Genome

Mesh:

Substances:

Year:  2021        PMID: 33392926     DOI: 10.1007/s12565-020-00567-7

Source DB:  PubMed          Journal:  Anat Sci Int        ISSN: 1447-073X            Impact factor:   1.741


  78 in total

Review 1.  Topology of mammalian developmental enhancers and their regulatory landscapes.

Authors:  Wouter de Laat; Denis Duboule
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

2.  Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of cornelia de Lange syndrome with predominant mental retardation.

Authors:  Matthew A Deardorff; Maninder Kaur; Dinah Yaeger; Abhinav Rampuria; Sergey Korolev; Juan Pie; Concepcion Gil-Rodríguez; María Arnedo; Bart Loeys; Antonie D Kline; Meredith Wilson; Kaj Lillquist; Victoria Siu; Feliciano J Ramos; Antonio Musio; Laird S Jackson; Dale Dorsett; Ian D Krantz
Journal:  Am J Hum Genet       Date:  2007-01-17       Impact factor: 11.025

3.  Premature chromatid separation is not a useful diagnostic marker for Cornelia de Lange syndrome.

Authors:  Paola Castronovo; Cristina Gervasini; Anna Cereda; Maura Masciadri; Donatella Milani; Silvia Russo; Angelo Selicorni; Lidia Larizza
Journal:  Chromosome Res       Date:  2009-08-19       Impact factor: 5.239

Review 4.  Genome architecture: domain organization of interphase chromosomes.

Authors:  Wendy A Bickmore; Bas van Steensel
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

5.  Organization and function of the 3D genome.

Authors:  Boyan Bonev; Giacomo Cavalli
Journal:  Nat Rev Genet       Date:  2016-10-31       Impact factor: 53.242

6.  DNA loop extrusion by human cohesin.

Authors:  Iain F Davidson; Benedikt Bauer; Daniela Goetz; Wen Tang; Gordana Wutz; Jan-Michael Peters
Journal:  Science       Date:  2019-11-21       Impact factor: 47.728

7.  Rearrangement of centromeric satellite DNA in hippocampal neurons exhibiting long-term potentiation.

Authors:  F Billia; A Baskys; P L Carlen; U De Boni
Journal:  Brain Res Mol Brain Res       Date:  1992-06

8.  Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression.

Authors:  Jonathan A Beagan; Elissa D Pastuzyn; Lindsey R Fernandez; Michael H Guo; Kelly Feng; Katelyn R Titus; Harshini Chandrashekar; Jason D Shepherd; Jennifer E Phillips-Cremins
Journal:  Nat Neurosci       Date:  2020-05-25       Impact factor: 24.884

Review 9.  Functional implications of genome topology.

Authors:  Giacomo Cavalli; Tom Misteli
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

10.  HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.

Authors:  Matthew A Deardorff; Masashige Bando; Ryuichiro Nakato; Erwan Watrin; Takehiko Itoh; Masashi Minamino; Katsuya Saitoh; Makiko Komata; Yuki Katou; Dinah Clark; Kathryn E Cole; Elfride De Baere; Christophe Decroos; Nataliya Di Donato; Sarah Ernst; Lauren J Francey; Yolanda Gyftodimou; Kyotaro Hirashima; Melanie Hullings; Yuuichi Ishikawa; Christian Jaulin; Maninder Kaur; Tohru Kiyono; Patrick M Lombardi; Laura Magnaghi-Jaulin; Geert R Mortier; Naohito Nozaki; Michael B Petersen; Hiroyuki Seimiya; Victoria M Siu; Yutaka Suzuki; Kentaro Takagaki; Jonathan J Wilde; Patrick J Willems; Claude Prigent; Gabriele Gillessen-Kaesbach; David W Christianson; Frank J Kaiser; Laird G Jackson; Toru Hirota; Ian D Krantz; Katsuhiko Shirahige
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

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  2 in total

Review 1.  Understanding Regulatory Mechanisms of Brain Function and Disease through 3D Genome Organization.

Authors:  Weifang Liu; Wujuan Zhong; Jiawen Chen; Bo Huang; Ming Hu; Yun Li
Journal:  Genes (Basel)       Date:  2022-03-25       Impact factor: 4.141

2.  Evaluation of chromatin mesoscale organization.

Authors:  Dana Lorber; Talila Volk
Journal:  APL Bioeng       Date:  2022-01-12
  2 in total

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