Literature DB >> 35953460

His-163 is a stereospecific proton donor in the mechanism of d-glucosaminate-6-phosphate ammonia-lyase.

Robert S Phillips1,2, Kaitlin L Anderson3, Declan Gresham4.   

Abstract

d-Glucosaminate-6-phosphate ammonia-lyase (DGL) catalyzes the conversion of d-glucosaminate-6-phosphate to 2-keto-3-deoxyglutarate-6-phosphate, with stereospecific protonation of C-3 of the product. The crystal structure of DGL showed that His-163 could serve as the proton donor. H163A mutant DGL is fully active in the steady-state reaction, and the pre-steady-state kinetics are very similar to those of wild-type DGL. However, H163A DGL accumulates a transient intermediate with λmax at 293 nm during the reaction that is not seen with wild-type DGL. Furthermore, NMR analysis of the reaction of H163A DGL in D2 O shows that the product is a mixture of deuterated diastereomers at C-3. These results establish that His-163 is the proton donor in the reaction mechanism of DGL.
© 2022 The Authors. FEBS Letters published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.

Entities:  

Keywords:  aminoacrylate intermediate; elimination reaction; pyridoxal-5′-phosphate; stereochemistry

Mesh:

Substances:

Year:  2022        PMID: 35953460      PMCID: PMC9529869          DOI: 10.1002/1873-3468.14469

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   3.864


  14 in total

1.  Structure and Mechanism of d-Glucosaminate-6-phosphate Ammonia-lyase: A Novel Octameric Assembly for a Pyridoxal 5'-Phosphate-Dependent Enzyme, and Unprecedented Stereochemical Inversion in the Elimination Reaction of a d-Amino Acid.

Authors:  Robert S Phillips; Samuel C-K Ting; Kaitlin Anderson
Journal:  Biochemistry       Date:  2021-05-05       Impact factor: 3.162

2.  Properties and mechanism of d-glucosaminate-6-phosphate ammonia-lyase: An aminotransferase family enzyme with d-amino acid specificity.

Authors:  Robert S Phillips; Samuel C Ting; Ange G Tetsadjio; Kaitlin L Anderson; Kyle M Friez; Katherine A Miller; Timothy R Hoover
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-12-23       Impact factor: 3.036

Review 3.  Reactive Enamines and Imines In Vivo: Lessons from the RidA Paradigm.

Authors:  Andrew J Borchert; Dustin C Ernst; Diana M Downs
Journal:  Trends Biochem Sci       Date:  2019-05-15       Impact factor: 13.807

4.  Formation of an intermediate and its rate of conversion to pyruvate during the tryptophanase-catalyzed degradation of S-o-nitrophenyl-L-cysteine.

Authors:  G G Hillebrand; J L Dye; C H Suelter
Journal:  Biochemistry       Date:  1979-05-01       Impact factor: 3.162

5.  Statistical analysis of enzyme kinetic data.

Authors:  W W Cleland
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

6.  Protein production by auto-induction in high density shaking cultures.

Authors:  F William Studier
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

7.  Inactivation of the dadB Salmonella typhimurium alanine racemase by D and L isomers of beta-substituted alanines: kinetics, stoichiometry, active site peptide sequencing, and reaction mechanism.

Authors:  B Badet; D Roise; C T Walsh
Journal:  Biochemistry       Date:  1984-10-23       Impact factor: 3.162

8.  Current developments in Coot for macromolecular model building of Electron Cryo-microscopy and Crystallographic Data.

Authors:  Ana Casañal; Bernhard Lohkamp; Paul Emsley
Journal:  Protein Sci       Date:  2020-03-02       Impact factor: 6.725

9.  2-Aminoacrylate stress damages diverse PLP-dependent enzymes in vivo.

Authors:  Wangchen Shen; Andrew J Borchert; Diana M Downs
Journal:  J Biol Chem       Date:  2022-04-20       Impact factor: 5.486

10.  An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol.

Authors:  Huanting Liu; James H Naismith
Journal:  BMC Biotechnol       Date:  2008-12-04       Impact factor: 2.563

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