Literature DB >> 34871032

Serendipity Reveals the Function and Physiological Role of a Large Family of Proteins.

Diana Downs1.   

Abstract

Microbial metabolism involves a complex set of interactions between metabolic pathways that include proteins of both known and uncharacterized function. While investigating the physiological strategy used by actinomycetes with two RpoB paralogs, Damiano et al. uncovered the endonuclease activity of a member of the Rid family (F. Damiano, M. Calcagnile, D. Pasanisi, A. Talà, et al., J Bacteriol, 204:e00462-21, 2022, https://doi.org/10.1128/JB.00462-21). While this finding was peripheral to the original question posed by the authors, it has considerable significance. The study by Damiano et al. highlights how unexpected, but fundamental, information can be gained by following phenotypic leads.

Entities:  

Keywords:  Rid family; RpoB

Year:  2021        PMID: 34871032      PMCID: PMC8846392          DOI: 10.1128/JB.00556-21

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.476


  16 in total

1.  Design of mineral medium for growth of Actinomadura sp. ATCC 39727, producer of the glycopeptide A40926: effects of calcium ions and nitrogen sources.

Authors:  Zuzana Technikova-Dobrova; Fabrizio Damiano; Salvatore M Tredici; Giovanni Vigliotta; Roberta di Summa; Luigi Palese; Anna Abbrescia; Nestor Labonia; Gabriele V Gnoni; Pietro Alifano
Journal:  Appl Microbiol Biotechnol       Date:  2004-05-12       Impact factor: 4.813

2.  Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase.

Authors:  Adelfia Talà; Guojun Wang; Martina Zemanova; Susumu Okamoto; Kozo Ochi; Pietro Alifano
Journal:  J Bacteriol       Date:  2008-12-01       Impact factor: 3.490

Review 3.  A genomic overview of pyridoxal-phosphate-dependent enzymes.

Authors:  Riccardo Percudani; Alessio Peracchi
Journal:  EMBO Rep       Date:  2003-09       Impact factor: 8.807

Review 4.  RidA Proteins Protect against Metabolic Damage by Reactive Intermediates.

Authors:  Jessica L Irons; Kelsey Hodge-Hanson; Diana M Downs
Journal:  Microbiol Mol Biol Rev       Date:  2020-07-15       Impact factor: 11.056

5.  Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov.

Authors:  Claudia Dalmastri; Luciano Gastaldo; Giorgia Letizia Marcone; Elisa Binda; Terenzio Congiu; Flavia Marinelli
Journal:  Int J Syst Evol Microbiol       Date:  2016-02       Impact factor: 2.747

6.  The complete 12 Mb genome and transcriptome of Nonomuraea gerenzanensis with new insights into its duplicated "magic" RNA polymerase.

Authors:  Valeria D'Argenio; Mauro Petrillo; Daniela Pasanisi; Caterina Pagliarulo; Roberta Colicchio; Adelfia Talà; Maria Stella de Biase; Mario Zanfardino; Emanuela Scolamiero; Chiara Pagliuca; Antonio Gaballo; Annunziata Gaetana Cicatiello; Piergiuseppe Cantiello; Irene Postiglione; Barbara Naso; Angelo Boccia; Miriana Durante; Luca Cozzuto; Paola Salvatore; Giovanni Paolella; Francesco Salvatore; Pietro Alifano
Journal:  Sci Rep       Date:  2016-12-21       Impact factor: 4.379

7.  Members of the Rid protein family have broad imine deaminase activity and can accelerate the Pseudomonas aeruginosa D-arginine dehydrogenase (DauA) reaction in vitro.

Authors:  Kelsey M Hodge-Hanson; Diana M Downs
Journal:  PLoS One       Date:  2017-09-28       Impact factor: 3.240

8.  Cj1388 Is a RidA Homolog and Is Required for Flagella Biosynthesis and/or Function in Campylobacter jejuni.

Authors:  Jessica Irons; Jessica C Sacher; Christine M Szymanski; Diana M Downs
Journal:  Front Microbiol       Date:  2019-09-06       Impact factor: 5.640

9.  The Rid family member RutC of Escherichia coli is a 3-aminoacrylate deaminase.

Authors:  Brandi A Buckner; Ashley M Lato; Shawn R Campagna; Diana M Downs
Journal:  J Biol Chem       Date:  2021-04-09       Impact factor: 5.157

10.  RidA proteins prevent metabolic damage inflicted by PLP-dependent dehydratases in all domains of life.

Authors:  Jennifer A Lambrecht; George E Schmitz; Diana M Downs
Journal:  mBio       Date:  2013-02-05       Impact factor: 7.867

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