Literature DB >> 31095388

Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.

Xuyan Ru1, Peng Zhang1, David N Beratan1,2,3.   

Abstract

The electrically conductive pili of Geobacter sulfurreducens are of both fundamental and practical interest. They facilitate extracellular and interspecies electron transfer (ET) and also provide an electrical interface between living and nonliving systems. We examine the possible mechanisms of G. sulfurreducens electron transfer in regimes ranging from incoherent to coherent transport. For plausible ET parameters, electron transfer in G. sulfurreducens bacterial nanowires mediated only by the protein is predicted to be dominated by incoherent hopping between phenylalanine (Phe) and tyrosine (Tyr) residues that are 3 to 4 Å apart, where Phe residues in the hopping pathways may create delocalized "islands." This mechanism could be accessible in the presence of strong oxidants that are capable of oxidizing Phe and Tyr residues. We also examine the physical requirements needed to sustain biological respiration via nanowires. We find that the hopping regimes with ET rates on the order of 108 s-1 between Phe islands and Tyr residues, and conductivities on the order of mS/cm, can support ET fluxes that are compatible with cellular respiration rates, although sustaining this delocalization in the heterogeneous protein environment may be challenging. Computed values of fully coherent electron fluxes through the pili are orders of magnitude too low to support microbial respiration. We suggest experimental probes of the transport mechanism based on mutant studies to examine the roles of aromatic amino acids and yet to be identified redox cofactors.

Entities:  

Year:  2019        PMID: 31095388      PMCID: PMC6613197          DOI: 10.1021/acs.jpcb.9b01086

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  46 in total

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Authors:  D N Beratan; J N Betts; J N Onuchic
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Journal:  J Am Chem Soc       Date:  2009-05-13       Impact factor: 15.419

Review 5.  Electron transfer in syntrophic communities of anaerobic bacteria and archaea.

Authors:  Alfons J M Stams; Caroline M Plugge
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6.  Tunable metallic-like conductivity in microbial nanowire networks.

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Journal:  Nat Nanotechnol       Date:  2011-08-07       Impact factor: 39.213

7.  Physical constraints on charge transport through bacterial nanowires.

Authors:  Nicholas F Polizzi; Spiros S Skourtis; David N Beratan
Journal:  Faraday Discuss       Date:  2012       Impact factor: 4.008

8.  Alignment of the c-type cytochrome OmcS along pili of Geobacter sulfurreducens.

Authors:  Ching Leang; Xinlei Qian; Tünde Mester; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792

9.  Nucleic Acid Charge Transfer: Black, White and Gray.

Authors:  Ravindra Venkatramani; Shahar Keinan; Alexander Balaeff; David N Beratan
Journal:  Coord Chem Rev       Date:  2011-04-01       Impact factor: 22.315

10.  Electron Flow through Proteins.

Authors:  Harry B Gray; Jay R Winkler
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  6 in total

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Authors:  Sibel Ebru Yalcin; Nikhil S Malvankar
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2.  Revisiting the Hole Size in Double Helical DNA with Localized Orbital Scaling Corrections.

Authors:  Ye Jin; Xuyan Ru; Neil Qiang Su; Yuncai Mei; David N Beratan; Peng Zhang; Weitao Yang
Journal:  J Phys Chem B       Date:  2020-04-13       Impact factor: 2.991

3.  Intrinsic electronic conductivity of individual atomically resolved amyloid crystals reveals micrometer-long hole hopping via tyrosines.

Authors:  Catharine Shipps; H Ray Kelly; Peter J Dahl; Sophia M Yi; Dennis Vu; David Boyer; Calina Glynn; Michael R Sawaya; David Eisenberg; Victor S Batista; Nikhil S Malvankar
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

4.  Role of intramolecular hydrogen bonds in promoting electron flow through amino acid and oligopeptide conjugates.

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 12.779

Review 5.  Geobacter Protein Nanowires.

Authors:  Derek R Lovley; David J F Walker
Journal:  Front Microbiol       Date:  2019-09-24       Impact factor: 5.640

6.  Current production by non-methanotrophic bacteria enriched from an anaerobic methane-oxidizing microbial community.

Authors:  S Berger; D R Shaw; T Berben; H T Ouboter; M H In 't Zandt; J Frank; J Reimann; M S M Jetten; C U Welte
Journal:  Biofilm       Date:  2021-06-15
  6 in total

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