Literature DB >> 31087332

Machine learning approach for distinguishing malignant and benign lung nodules utilizing standardized perinodular parenchymal features from CT.

Johanna Uthoff1,2, Matthew J Stephens3, John D Newell1,2, Eric A Hoffman1,2, Jared Larson2, Nicholas Koehn2, Frank A De Stefano2, Chrissy M Lusk4, Angela S Wenzlaff4, Donovan Watza4, Christine Neslund-Dudas5, Laurie L Carr6, David A Lynch7, Ann G Schwartz4, Jessica C Sieren1,2.   

Abstract

PURPOSE: Computed tomography (CT) is an effective method for detecting and characterizing lung nodules in vivo. With the growing use of chest CT, the detection frequency of lung nodules is increasing. Noninvasive methods to distinguish malignant from benign nodules have the potential to decrease the clinical burden, risk, and cost involved in follow-up procedures on the large number of false-positive lesions detected. This study examined the benefit of including perinodular parenchymal features in machine learning (ML) tools for pulmonary nodule assessment.
METHODS: Lung nodule cases with pathology confirmed diagnosis (74 malignant, 289 benign) were used to extract quantitative imaging characteristics from computed tomography scans of the nodule and perinodular parenchyma tissue. A ML tool development pipeline was employed using k-medoids clustering and information theory to determine efficient predictor sets for different amounts of parenchyma inclusion and build an artificial neural network classifier. The resulting ML tool was validated using an independent cohort (50 malignant, 50 benign).
RESULTS: The inclusion of parenchymal imaging features improved the performance of the ML tool over exclusively nodular features (P < 0.01). The best performing ML tool included features derived from nodule diameter-based surrounding parenchyma tissue quartile bands. We demonstrate similar high-performance values on the independent validation cohort (AUC-ROC = 0.965). A comparison using the independent validation cohort with the Fleischner pulmonary nodule follow-up guidelines demonstrated a theoretical reduction in recommended follow-up imaging and procedures.
CONCLUSIONS: Radiomic features extracted from the parenchyma surrounding lung nodules contain valid signals with spatial relevance for the task of lung cancer risk classification. Through standardization of feature extraction regions from the parenchyma, ML tool validation performance of 100% sensitivity and 96% specificity was achieved.
© 2019 American Association of Physicists in Medicine.

Entities:  

Keywords:  artificial intelligence; computed tomography; pulmonary nodule; radiomics; risk assessment

Mesh:

Year:  2019        PMID: 31087332      PMCID: PMC6945763          DOI: 10.1002/mp.13592

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  29 in total

Review 1.  After Detection: The Improved Accuracy of Lung Cancer Assessment Using Radiologic Computer-aided Diagnosis.

Authors:  Guy J Amir; Harold P Lehmann
Journal:  Acad Radiol       Date:  2015-11-23       Impact factor: 3.173

2.  Improved pulmonary nodule classification utilizing quantitative lung parenchyma features.

Authors:  Samantha K N Dilger; Johanna Uthoff; Alexandra Judisch; Emily Hammond; Sarah L Mott; Brian J Smith; John D Newell; Eric A Hoffman; Jessica C Sieren
Journal:  J Med Imaging (Bellingham)       Date:  2015-09-01

3.  Feature selection and performance evaluation of support vector machine (SVM)-based classifier for differentiating benign and malignant pulmonary nodules by computed tomography.

Authors:  Yanjie Zhu; Yongqiang Tan; Yanqing Hua; Mingpeng Wang; Guozhen Zhang; Jianguo Zhang
Journal:  J Digit Imaging       Date:  2009-02-26       Impact factor: 4.056

4.  A Segmentation Framework of Pulmonary Nodules in Lung CT Images.

Authors:  Sudipta Mukhopadhyay
Journal:  J Digit Imaging       Date:  2016-02       Impact factor: 4.056

5.  Transport Oncophysics in silico, in vitro, and in vivo. Preface.

Authors:  Eugene J Koay; Mauro Ferrari
Journal:  Phys Biol       Date:  2014-11-26       Impact factor: 2.583

6.  Guidelines for Management of Incidental Pulmonary Nodules Detected on CT Images: From the Fleischner Society 2017.

Authors:  Heber MacMahon; David P Naidich; Jin Mo Goo; Kyung Soo Lee; Ann N C Leung; John R Mayo; Atul C Mehta; Yoshiharu Ohno; Charles A Powell; Mathias Prokop; Geoffrey D Rubin; Cornelia M Schaefer-Prokop; William D Travis; Paul E Van Schil; Alexander A Bankier
Journal:  Radiology       Date:  2017-02-23       Impact factor: 11.105

7.  Pulmonary nodule classification with deep residual networks.

Authors:  Aiden Nibali; Zhen He; Dennis Wollersheim
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-05-13       Impact factor: 2.924

8.  Reduced lung-cancer mortality with low-dose computed tomographic screening.

Authors:  Denise R Aberle; Amanda M Adams; Christine D Berg; William C Black; Jonathan D Clapp; Richard M Fagerstrom; Ilana F Gareen; Constantine Gatsonis; Pamela M Marcus; JoRean D Sicks
Journal:  N Engl J Med       Date:  2011-06-29       Impact factor: 91.245

9.  Comparison of low- and ultralow-dose computed tomography protocols for quantitative lung and airway assessment.

Authors:  Emily Hammond; Chelsea Sloan; John D Newell; Jered P Sieren; Melissa Saylor; Craig Vidal; Shayna Hogue; Frank De Stefano; Alexa Sieren; Eric A Hoffman; Jessica C Sieren
Journal:  Med Phys       Date:  2017-08-02       Impact factor: 4.071

10.  Highly accurate model for prediction of lung nodule malignancy with CT scans.

Authors:  Jason L Causey; Junyu Zhang; Shiqian Ma; Bo Jiang; Jake A Qualls; David G Politte; Fred Prior; Shuzhong Zhang; Xiuzhen Huang
Journal:  Sci Rep       Date:  2018-06-18       Impact factor: 4.379

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  17 in total

Review 1.  A narrative review on current imaging applications of artificial intelligence and radiomics in oncology: focus on the three most common cancers.

Authors:  Simone Vicini; Chandra Bortolotto; Marco Rengo; Daniela Ballerini; Davide Bellini; Iacopo Carbone; Lorenzo Preda; Andrea Laghi; Francesca Coppola; Lorenzo Faggioni
Journal:  Radiol Med       Date:  2022-06-30       Impact factor: 6.313

2.  Computed Tomography Features of Lung Structure Have Utility for Differentiating Malignant and Benign Pulmonary Nodules.

Authors:  Johanna M Uthoff; Sarah L Mott; Jared Larson; Christine M Neslund-Dudas; Ann G Schwartz; Jessica C Sieren
Journal:  Chronic Obstr Pulm Dis       Date:  2022-04-29

3.  Differentiation of non-small cell lung cancer and histoplasmosis pulmonary nodules: insights from radiomics model performance compared with clinician observers.

Authors:  Johanna Uthoff; Prashant Nagpal; Rolando Sanchez; Thomas J Gross; Changhyun Lee; Jessica C Sieren
Journal:  Transl Lung Cancer Res       Date:  2019-12

Review 4.  A scoping review of artificial intelligence applications in thoracic surgery.

Authors:  Kenneth P Seastedt; Dana Moukheiber; Saurabh A Mahindre; Chaitanya Thammineni; Darin T Rosen; Ammara A Watkins; Daniel A Hashimoto; Chuong D Hoang; Jacques Kpodonu; Leo A Celi
Journal:  Eur J Cardiothorac Surg       Date:  2022-01-24       Impact factor: 4.191

Review 5.  Challenges and opportunities for artificial intelligence in oncological imaging.

Authors:  H M C Cheung; D Rubin
Journal:  Clin Radiol       Date:  2021-04-24       Impact factor: 3.389

6.  The Effects of Perinodular Features on Solid Lung Nodule Classification.

Authors:  José Lucas Leite Calheiros; Lucas Benevides Viana de Amorim; Lucas Lins de Lima; Ailton Felix de Lima Filho; José Raniery Ferreira Júnior; Marcelo Costa de Oliveira
Journal:  J Digit Imaging       Date:  2021-03-31       Impact factor: 4.903

7.  Machine Learning and Feature Selection Methods for Disease Classification With Application to Lung Cancer Screening Image Data.

Authors:  Darcie A P Delzell; Sara Magnuson; Tabitha Peter; Michelle Smith; Brian J Smith
Journal:  Front Oncol       Date:  2019-12-11       Impact factor: 6.244

8.  Application of Machine Learning in Pulmonary Function Assessment Where Are We Now and Where Are We Going?

Authors:  Paresh C Giri; Anand M Chowdhury; Armando Bedoya; Hengji Chen; Hyun Suk Lee; Patty Lee; Craig Henriquez; Neil R MacIntyre; Yuh-Chin T Huang
Journal:  Front Physiol       Date:  2021-06-24       Impact factor: 4.566

9.  Deep segmentation networks predict survival of non-small cell lung cancer.

Authors:  Stephen Baek; Yusen He; Bryan G Allen; John M Buatti; Brian J Smith; Ling Tong; Zhiyu Sun; Jia Wu; Maximilian Diehn; Billy W Loo; Kristin A Plichta; Steven N Seyedin; Maggie Gannon; Katherine R Cabel; Yusung Kim; Xiaodong Wu
Journal:  Sci Rep       Date:  2019-11-21       Impact factor: 4.379

Review 10.  Machine Learning for Pulmonary and Critical Care Medicine: A Narrative Review.

Authors:  Eric Mlodzinski; David J Stone; Leo A Celi
Journal:  Pulm Ther       Date:  2020-02-05
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