| Literature DB >> 31086267 |
Seyedehnafiseh Mirniaharikandehei1, Joshua VanOsdol2, Morteza Heidari1, Gopichandh Danala1, Sri Nandhini Sethuraman2, Ashish Ranjan2, Bin Zheng3.
Abstract
The aim of this study is to investigate the feasibility of identifying and applying quantitative imaging features computed from ultrasound images of athymic nude mice to predict tumor response to treatment at an early stage. A computer-aided detection (CAD) scheme with a graphic user interface was developed to conduct tumor segmentation and image feature analysis. A dataset involving ultrasound images of 23 athymic nude mice bearing C26 mouse adenocarcinomas was assembled. These mice were divided into 7 treatment groups utilizing a combination of thermal and nanoparticle-controlled drug delivery. Longitudinal ultrasound images of mice were taken prior and post-treatment in day 3 and day 6. After tumor segmentation, CAD scheme computed image features and created four feature pools including features computed from (1) prior treatment images only and (2) difference between prior and post-treatment images of day 3 and day 6, respectively. To predict tumor treatment efficacy, data analysis was performed to identify top image features and an optimal feature fusion method, which have a higher correlation to tumor size increase ratio (TSIR) determined at Day 10. Using image features computed from day 3, the highest Pearson Correlation coefficients between the top two features selected from two feature pools versus TSIR were 0.373 and 0.552, respectively. Using an equally weighted fusion method of two features computed from prior and post-treatment images, the correlation coefficient increased to 0.679. Meanwhile, using image features computed from day 6, the highest correlation coefficient was 0.680. Study demonstrated the feasibility of extracting quantitative image features from the ultrasound images taken at an early treatment stage to predict tumor response to therapies.Entities:
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Year: 2019 PMID: 31086267 PMCID: PMC6513863 DOI: 10.1038/s41598-019-43847-7
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1An example of four ultrasound images taken from a mouse in Day 3 (A) prior- DOX treatment and (B) post-treatment, in Day 6 (C) prior-treatment and (D) post-treatment, respectively. The tumor boundary contours are marked on each image.
Figure 2Proposed Algorithm for processing each image.
Figure 3Illustration of applying Gaussian filter to the ultrasound image, which shows (A) manually marked tumor boundary contour, (B) the segmented tumor region and (C) tumor image after applying the Gaussian filter.
List of the computed 284 image features in four feature groups.
| Feature Class | Feature Number | Feature Description |
|---|---|---|
| Morphology | 1–9 | Volume, convexity, maximum radius, radius standard deviation (STD), surface area, compactness, maximum three-dimensional diameter, spherical disproportion, and spherical ratio. |
| Density | 10–30 | Density, density STD, gradient mean, gradient STD, ISO-intensity, fluctuation mean, fluctuation STD, mean contrast, contrast, skewness, kurtosis, STD ratio of tumor to the boundary, energy, entropy, maximum intensity, mean absolute deviation, median, minimum, range, RMS, and uniformity. |
| Texture | 31–74 | 11 gray-level run length-based features in four directions (0°, 45°, 90°, and 135°). |
| Wavelet | 75–284 | Apply the density and texture features on the four wavelet decompositions. |
Figure 4The proposed algorithm for image filtering and feature computation.
Figure 5Distribution of the normalized TSIR ratios based on (A) each mouse and (B) average of each therapy group.
Pearson Correlation coefficient interpretation[19].
| “r “ Value | Relation |
|---|---|
| +0.70 or higher (−0.70 or lower) | Very strong positive (negative) relationship |
| +0.40 to +0.69 (−0.40 or −0.69) | Strong positive (negative) relationship |
| +0.30 to +0.39 (−0.30 or −0.39) | Moderate positive (negative) relationship |
| +0.20 to +0.29 (−0.20 or−0.29) | Weak positive (negative) relationship |
| +0.01 to +0.19 (−0.01 or −0.19) | No or negligible relationship |
| 0 | No relationship [zero correlation] |
Figure 6The proposed algorithm for examining reproducibility or consistency between the image features computed from the base frame and other frames.
List of two sets of the selected 5 top image features from 2 image features of prior treatment on Day 3 and Day 6.
| Day 3 | P value comparing to Range | Day 6 | P value comparing to GLNHL | ||
|---|---|---|---|---|---|
| Feature | Correlation coefficient with TSIR | Feature | Correlation coefficient with TSIR | ||
| Range | GLNHL | ||||
| EntropyHH | 0.361 | 0.468 | RPHL | 0.643 | <0.01 |
| RPLL | 0.359 | 0.415 | GLNHL 90° | 0.605 | <0.01 |
| EntropyLL | 0.355 | 0.478 | RLNLL | 0.598 | <0.01 |
| GLNHL 90° | 0.344 | 0.377 | EntropyHL | 0.597 | <0.01 |
Comparison of the correlation coefficients of the same image features computed from prior treatment ultrasound images acquired on Day 3 and Day 6.
| GLNHL 90° | Tumor Volume | RLNHL | RPHH 90° | GLNLL | |
|---|---|---|---|---|---|
| Day3 | 0.344 | 0.341 | 0.329 | 0.326 | 0.318 |
| Day6 | 0.605 | 0.525 | 0.586 | 0.546 | 0.551 |
List of the 5 selected image features computed from the difference of prior and post-treatment ultrasound images acquired on Day 3 with the high correlation with TSIR.
| No. | Features | Correlation coefficient with TSIR | P value comparing to F1 |
|---|---|---|---|
| F1 | GLNHL | ||
| F2 | LGRE 0° | 0.495 | 0.128 |
| F3 | RangeHL | 0.388 | 0.011 |
| F4 | LGRELL | 0.387 | 0.530 |
| F5 | Gradient STDLH | 0.373 | 0.809 |
| Fusion Average (F1 & F3) |
The top image features computed from the difference of prior and post-treatment ultrasound images acquired on Day 6 with the high correlation with TSIR.
| Feature | Correlation coefficient with TSIR | P value comparing to RLNHH 45° |
|---|---|---|
| RLNHH 45° | ||
| RLNHH 135° | 0.420 | <0.01 |
| RPHH 90° | 0.358 | <0.01 |
| RPHH | 0.357 | <0.01 |
| LGRELL | 0.306 | 0.251 |
Figure 7The GLNHL values computed from all mice under different treatments, which are sorted from low to high performance (right to left), respectively.
An example of the base frame and other frames relationships.
| Mean Correlation Coefficient | 95% Confidence Interval | Standard deviation | |
|---|---|---|---|
| GLNHL | 0.978 | [0.951, 1.00] | 0.125 |
| LGRE 0° | 0.9668 | [0.019, 0.917] | 0.224 |
| RangeHL | 0.9491 | [−0.058, 0.608] | 0.167 |
| LGRELL | 0.9719 | [0.100, 0.978] | 0.219 |
| Gradient STDLH | 0.9513 | [0.089, 0.905] | 0.204 |