Literature DB >> 31085095

RNA Packaging in HIV.

Alan Rein1.   

Abstract

Successful replication of the AIDS retrovirus, HIV, requires that its genomic RNA be packaged in assembling virus particles with high fidelity. However, cellular mRNAs can also be packaged under some conditions. Viral RNA (vRNA) contains a 'packaging signal' (ψ) and is packaged as a dimer, with two vRNA monomers joined by a limited number of base pairs. It has two conformers, only one of which is capable of dimerization and packaging. Recent years have seen important progress on the 3D structure of dimeric ψ. Gag, the protein that assembles into the virus particle, interacts specifically with ψ, but this is obscured under physiological conditions by its high nonspecific affinity for any RNA. New results suggest that vRNA is selected for packaging because ψ nucleates assembly more efficiently than other RNAs. Published by Elsevier Ltd.

Entities:  

Keywords:  HIV; RNA; retroviruses; virus assembly

Mesh:

Substances:

Year:  2019        PMID: 31085095      PMCID: PMC6625830          DOI: 10.1016/j.tim.2019.04.003

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  33 in total

1.  Duplication of the primary encapsidation and dimer linkage region of human immunodeficiency virus type 1 RNA results in the appearance of monomeric RNA in virions.

Authors:  J Sakuragi ; T Shioda; A T Panganiban
Journal:  J Virol       Date:  2001-03       Impact factor: 5.103

2.  Two alternating structures of the HIV-1 leader RNA.

Authors:  H Huthoff; B Berkhout
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

3.  NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.

Authors:  G K Amarasinghe; R N De Guzman; R B Turner; K J Chancellor; Z R Wu; M F Summers
Journal:  J Mol Biol       Date:  2000-08-11       Impact factor: 5.469

4.  Modulation of HIV-like particle assembly in vitro by inositol phosphates.

Authors:  S Campbell; R J Fisher; E M Towler; S Fox; H J Issaq; T Wolfe; L R Phillips; A Rein
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

Review 5.  Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism.

Authors:  Judith G Levin; Jianhui Guo; Ioulia Rouzina; Karin Musier-Forsyth
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2005

6.  Selective and nonselective packaging of cellular RNAs in retrovirus particles.

Authors:  Samuel J Rulli; Catherine S Hibbert; Jane Mirro; Thoru Pederson; Shyam Biswal; Alan Rein
Journal:  J Virol       Date:  2007-03-28       Impact factor: 5.103

7.  A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon.

Authors:  Truus E M Abbink; Ben Berkhout
Journal:  J Biol Chem       Date:  2002-11-27       Impact factor: 5.157

8.  High rates of human immunodeficiency virus type 1 recombination: near-random segregation of markers one kilobase apart in one round of viral replication.

Authors:  Terence Rhodes; Heather Wargo; Wei-Shau Hu
Journal:  J Virol       Date:  2003-10       Impact factor: 5.103

9.  Opposing mechanisms involving RNA and lipids regulate HIV-1 Gag membrane binding through the highly basic region of the matrix domain.

Authors:  Vineela Chukkapalli; Seung J Oh; Akira Ono
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

10.  High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states.

Authors:  Kevin A Wilkinson; Robert J Gorelick; Suzy M Vasa; Nicolas Guex; Alan Rein; David H Mathews; Morgan C Giddings; Kevin M Weeks
Journal:  PLoS Biol       Date:  2008-04-29       Impact factor: 8.029

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  34 in total

1.  The heart of the HIV RNA packaging signal?

Authors:  Alan Rein
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-28       Impact factor: 11.205

2.  HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal.

Authors:  Samantha Sarni; Banhi Biswas; Shuohui Liu; Erik D Olson; Jonathan P Kitzrow; Alan Rein; Vicki H Wysocki; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2020-08-13       Impact factor: 5.157

3.  Biochemical Reconstitution of HIV-1 Assembly and Maturation.

Authors:  Iga Kucharska; Pengfei Ding; Kaneil K Zadrozny; Robert A Dick; Michael F Summers; Barbie K Ganser-Pornillos; Owen Pornillos
Journal:  J Virol       Date:  2020-02-14       Impact factor: 5.103

4.  Visualizing the translation and packaging of HIV-1 full-length RNA.

Authors:  Jianbo Chen; Yang Liu; Bin Wu; Olga A Nikolaitchik; Preeti R Mohan; Jiji Chen; Vinay K Pathak; Wei-Shau Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-04       Impact factor: 11.205

5.  Stability and conformation of the dimeric HIV-1 genomic RNA 5'UTR.

Authors:  Robert J Blakemore; Cleo Burnett; Canessa Swanson; Siarhei Kharytonchyk; Alice Telesnitsky; James B Munro
Journal:  Biophys J       Date:  2021-09-14       Impact factor: 4.033

6.  Unpaired Guanosines in the 5' Untranslated Region of HIV-1 RNA Act Synergistically To Mediate Genome Packaging.

Authors:  Olga A Nikolaitchik; Xayathed Somoulay; Jonathan M O Rawson; Jennifer A Yoo; Vinay K Pathak; Wei-Shau Hu
Journal:  J Virol       Date:  2020-10-14       Impact factor: 5.103

7.  Reconstitution and visualization of HIV-1 capsid-dependent replication and integration in vitro.

Authors:  Devin E Christensen; Barbie K Ganser-Pornillos; Jarrod S Johnson; Owen Pornillos; Wesley I Sundquist
Journal:  Science       Date:  2020-10-09       Impact factor: 47.728

8.  Show your cap or be packaged into HIV-1.

Authors:  Judith G Levin; Alan Rein
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

9.  Natural Occurring Polymorphisms in HIV-1 Integrase and RNase H Regulate Viral Release and Autoprocessing.

Authors:  Tomozumi Imamichi; John G Bernbaum; Sylvain Laverdure; Jun Yang; Qian Chen; Helene Highbarger; Ming Hao; Hongyan Sui; Robin Dewar; Weizhong Chang; H Clifford Lane
Journal:  J Virol       Date:  2021-09-15       Impact factor: 5.103

10.  Structural phylogenetic analysis reveals lineage-specific RNA repetitive structural motifs in all coronaviruses and associated variations in SARS-CoV-2.

Authors:  Shih-Cheng Chen; René C L Olsthoorn; Chien-Hung Yu
Journal:  Virus Evol       Date:  2021-06-16
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