Literature DB >> 31077036

The Origin of tRNA Deduced from Pseudomonas aeruginosa 5' Anticodon-Stem Sequence : Anticodon-stem loop hypothesis.

Kenji Ikehara1,2,3.   

Abstract

The riddle of the origin of life is unsolved as yet. One of the best ways to solve the riddle would be to find a vestige of the first life from databases of DNA and/or protein of modern organisms. It would be, especially, important to know the origin of tRNA, because it mediates between genetic information and the amino acid sequence of a protein. Here I attempt to find a vestige of the origin and evolution of tRNA from base sequences of Pseudomonas aeruginosa tRNA gene. It was first perceived that 5' anticodon (AntiC) stem sequences of P. aeruginosa tRNA for translation of G-start codon (GNN) are intimately and mutually related. Then, mutual relations among all of the forty-two 5' AntiC stem sequences of P. aeruginosa tRNA were examined. These relationships imply that P. aeruginosa tRNA originated from four anticodon stem-loops (AntiC-SL) translating GNC codons to the corresponding four amino acids, Gly, Ala, Asp and Val (where N is G, C, A, or T). In contrast to the case of AntiC-stem sequence, a mutual relation map could not be drawn with D-, T- and acceptor-stem sequences of P. aeruginosa tRNA. Thus I conclude that the four AntiC-SLs were the first primeval tRNAs.

Entities:  

Keywords:  Anticodon-stem loop; GADV hypothesis; GNC primeval genetic code; GNC-SNS primitive genetic code hypothesis; Origin of life; Origin of tRNA; Origin of the genetic code; [GADV]-protein world hypothesis

Mesh:

Substances:

Year:  2019        PMID: 31077036     DOI: 10.1007/s11084-019-09573-w

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  22 in total

1.  A novel theory on the origin of the genetic code: a GNC-SNS hypothesis.

Authors:  Kenji Ikehara; Yoko Omori; Rieko Arai; Akiko Hirose
Journal:  J Mol Evol       Date:  2002-04       Impact factor: 2.395

Review 2.  Origins of gene, genetic code, protein and life: comprehensive view of life systems from a GNC-SNS primitive genetic code hypothesis.

Authors:  K Ikehara
Journal:  J Biosci       Date:  2002-03       Impact factor: 1.826

3.  Consensus temporal order of amino acids and evolution of the triplet code.

Authors:  E N Trifonov
Journal:  Gene       Date:  2000-12-30       Impact factor: 3.688

4.  A co-evolution theory of the genetic code.

Authors:  J T Wong
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

5.  The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the last universal common ancestor (LUCA).

Authors:  Massimo Di Giulio
Journal:  J Theor Biol       Date:  2005-11-11       Impact factor: 2.691

Review 6.  Possible steps to the emergence of life: the [GADV]-protein world hypothesis.

Authors:  Kenji Ikehara
Journal:  Chem Rec       Date:  2005       Impact factor: 6.771

7.  Chiral-selective aminoacylation of an RNA minihelix: Mechanistic features and chiral suppression.

Authors:  Koji Tamura; Paul R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-01       Impact factor: 11.205

8.  A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code.

Authors:  Paul G Higgs
Journal:  Biol Direct       Date:  2009-04-24       Impact factor: 4.540

9.  The split genes of Nanoarchaeum equitans are an ancestral character.

Authors:  Massimo Di Giulio
Journal:  Gene       Date:  2008-06-11       Impact factor: 3.688

10.  An extension of the coevolution theory of the origin of the genetic code.

Authors:  Massimo Di Giulio
Journal:  Biol Direct       Date:  2008-09-05       Impact factor: 4.540

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