Literature DB >> 31069945

DNA Nanotechnology as an Emerging Tool to Study Mechanotransduction in Living Systems.

Victor Pui-Yan Ma1, Khalid Salaita1,2,3.   

Abstract

The ease of tailoring DNA nanostructures with sub-nanometer precision has enabled new and exciting in vivo applications in the areas of chemical sensing, imaging, and gene regulation. A new emerging paradigm in the field is that DNA nanostructures can be engineered to study molecular mechanics. This new development has transformed the repertoire of capabilities enabled by DNA to include detection of molecular forces in living cells and elucidating the fundamental mechanisms of mechanotransduction. This Review first describes fundamental aspects of force-induced melting of DNA hairpins and duplexes. This is then followed by a survey of the currently available force sensing DNA probes and different fluorescence-based force readout modes. Throughout the Review, applications of these probes in studying immune receptor signaling, including the T cell receptor and B cell receptor, as well as Notch and integrin signaling, are discussed.
© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA; fluorescence; mechanobiology; molecular force probes; nanotechnology

Mesh:

Substances:

Year:  2019        PMID: 31069945      PMCID: PMC6663650          DOI: 10.1002/smll.201900961

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  110 in total

1.  The immunological synapse: a molecular machine controlling T cell activation.

Authors:  A Grakoui; S K Bromley; C Sumen; M M Davis; A S Shaw; P M Allen; M L Dustin
Journal:  Science       Date:  1999-07-09       Impact factor: 47.728

2.  Dynamic force spectroscopy of single DNA molecules.

Authors:  T Strunz; K Oroszlan; R Schäfer; H J Güntherodt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

Review 3.  The immunological synapse.

Authors:  S K Bromley; W R Burack; K G Johnson; K Somersalo; T N Sims; C Sumen; M M Davis; A S Shaw; P M Allen; M L Dustin
Journal:  Annu Rev Immunol       Date:  2001       Impact factor: 28.527

4.  How strong is a covalent bond?

Authors: 
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

5.  Stresses at the cell-to-substrate interface during locomotion of fibroblasts.

Authors:  M Dembo; Y L Wang
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

6.  Force and kinetic barriers to unzipping of the DNA double helix.

Authors:  S Cocco; R Monasson; J F Marko
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

7.  Cells lying on a bed of microneedles: an approach to isolate mechanical force.

Authors:  John L Tan; Joe Tien; Dana M Pirone; Darren S Gray; Kiran Bhadriraju; Christopher S Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-27       Impact factor: 11.205

8.  DNA: a programmable force sensor.

Authors:  Christian Albrecht; Kerstin Blank; Mio Lalic-Mülthaler; Siegfried Hirler; Thao Mai; Ilka Gilbert; Susanne Schiffmann; Tom Bayer; Hauke Clausen-Schaumann; Hermann E Gaub
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

Review 9.  Mechanical processes in biochemistry.

Authors:  Carlos Bustamante; Yann R Chemla; Nancy R Forde; David Izhaky
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

10.  Nanometal surface energy transfer in optical rulers, breaking the FRET barrier.

Authors:  C S Yun; A Javier; T Jennings; M Fisher; S Hira; S Peterson; B Hopkins; N O Reich; G F Strouse
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

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  16 in total

1.  DNA probes that store mechanical information reveal transient piconewton forces applied by T cells.

Authors:  Rong Ma; Anna V Kellner; Victor Pui-Yan Ma; Hanquan Su; Brendan R Deal; Joshua M Brockman; Khalid Salaita
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-07       Impact factor: 11.205

2.  Extending the Capabilities of Molecular Force Sensors via DNA Nanotechnology.

Authors:  Susana M Beltrán; Marvin J Slepian; Rebecca E Taylor
Journal:  Crit Rev Biomed Eng       Date:  2020

3.  EGFR activation attenuates the mechanical threshold for integrin tension and focal adhesion formation.

Authors:  Tejeshwar C Rao; Victor Pui-Yan Ma; Aaron Blanchard; Tara M Urner; Shreya Grandhi; Khalid Salaita; Alexa L Mattheyses
Journal:  J Cell Sci       Date:  2020-07-10       Impact factor: 5.285

4.  Measurement of Minute Cellular Forces by Traction Force Microscopy.

Authors:  Valentin Jaumouillé
Journal:  Methods Mol Biol       Date:  2022

5.  Scalable One-Pot-Liquid-Phase Oligonucleotide Synthesis for Model Network Hydrogels.

Authors:  Guido Creusen; Cecilia Oluwadunsin Akintayo; Katja Schumann; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-09-16       Impact factor: 15.419

6.  DNA Tension Probes to Map the Transient Piconewton Receptor Forces by Immune Cells.

Authors:  Rong Ma; Anna V Kellner; Yuesong Hu; Brendan R Deal; Aaron T Blanchard; Khalid Salaita
Journal:  J Vis Exp       Date:  2021-03-20       Impact factor: 1.355

Review 7.  Recent developments in DNA-based mechanical nanodevices.

Authors:  Qian Tian; Puspam Keshri; Mingxu You
Journal:  Chem Commun (Camb)       Date:  2022-04-12       Impact factor: 6.222

8.  Mechanically Triggered Hybridization Chain Reaction.

Authors:  Yuxin Duan; Roxanne Glazier; Alisina Bazrafshan; Yuesong Hu; Sk Aysha Rashid; Brian G Petrich; Yonggang Ke; Khalid Salaita
Journal:  Angew Chem Int Ed Engl       Date:  2021-07-29       Impact factor: 16.823

Review 9.  Mechanotransduction in T Cell Development, Differentiation and Function.

Authors:  Muaz Rushdi; Kaitao Li; Zhou Yuan; Stefano Travaglino; Arash Grakoui; Cheng Zhu
Journal:  Cells       Date:  2020-02-05       Impact factor: 6.600

10.  DNA mechanotechnology reveals that integrin receptors apply pN forces in podosomes on fluid substrates.

Authors:  Roxanne Glazier; Joshua M Brockman; Emily Bartle; Alexa L Mattheyses; Olivier Destaing; Khalid Salaita
Journal:  Nat Commun       Date:  2019-10-18       Impact factor: 14.919

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