Literature DB >> 31040692

Association of polymorphisms in MALAT1 with the risk of esophageal squamous cell carcinoma in a Chinese population.

Yan Qu1, Na Shao2, Wenjing Yang1, Jianbo Wang1, Yufeng Cheng1.   

Abstract

OBJECTIVE: The main aim of this study was to investigate the association of polymorphisms in long non-coding RNA metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) with the risk of esophageal squamous cell carcinoma (ESCC) in a Chinese population.
METHODS: A total of 245 ESCC patients and 490 gender- and age-matched cancer-free controls were genotyped for four tag single nucleotide polymorphisms (SNPs) of MALAT1 (rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G). Statistical analyses including chi-squared test and logistic regression were performed to identify the association between the tag SNPs and risk of ESCC, and false discovery rate (FDR) <25% was applied to adjust for multiple comparisons.
RESULTS: We found that rs3200401 C > T polymorphism of MALAT1 was significantly associated with increased risk of ESCC (CT vs CC: adjusted OR =1.59, 95% CI =1.07-2.35, P=0.021; TT vs CC: adjusted OR =2.27, 95% CI =1.04-4.96, P=0.039; dominant model [CT+TT vs CC]: adjusted OR =1.68, 95% CI =1.16-2.43, P=0.006). In the stratified analysis, rs3200401 TT and CT/TT genotypes were associated with increased risk of ESCC compared with CC genotype in subgroup of never drinking (TT vs CC: adjusted OR =2.34, 95% CI =1.02-5.34, P=0.044; CT/TT vs CC: adjusted OR =1.52, 95% CI =1.02-2.26, P=0.041). However, compared with AA genotype, MALAT1 rs619586 GG was associated with decreased risk of ESCC in ever drinking subgroup (GG vs AA: adjusted OR =0.38, 95% CI =0.15-0.99, P=0.049). The results remained significant after FDR adjustment (FDR value <0.25) except for the comparison between rs619586 GG and AA genotype in ever drinking subgroup.
CONCLUSION: Taken together, our findings proposed that polymorphism rs3200401 C > T in MALAT1 gene is associated with increased risk of ESCC. Since the association between rs619586 A > G polymorphism and ESCC risk was not significant after FDR adjustment, there was a minor possibility that rs619586 A > G might be a protective factor for ESCC.

Entities:  

Keywords:  MALAT1; esophageal squamous cell carcinoma; polymorphism; single nucleotide polymorphism; susceptibility

Year:  2019        PMID: 31040692      PMCID: PMC6452823          DOI: 10.2147/OTT.S191155

Source DB:  PubMed          Journal:  Onco Targets Ther        ISSN: 1178-6930            Impact factor:   4.147


Introduction

Esophageal cancer (EC) is the sixth leading cause of cancer-related death worldwide.1 According to the latest epidemiological data, the incident cases and death tolls in China due to EC were found to be 477,900 and 375,000 each year, which ranked third and fourth among all the malignant tumors, respectively.2 Although great advances have been achieved in diagnosis and treatment during the past decades, the mortality due to EC remains dismal, owing to the lack of early detection and effective treatment strategies for metastatic disease. As esophageal squamous cell carcinoma (ESCC) accounts for 90% of EC cases in China, increased efforts are required to predict, diagnose, and treat ESCC more effectively. Long non-coding RNAs (lncRNAs) are a type of ncRNAs that are more than 200 nucleotides (nts) in length and are unable to encode proteins.3 They have been found to play important roles in the progress of several common diseases (eg, myocardial infarction and hyperglycemia).4–6 In malignant tumors, increasing number of lncRNAs were found to have important functions in the process of genesis, progress, and treatment response of tumor cells.7–9 Metastasis-associated lung adenocarcinoma transcript 1 (MALAT1), also known as nuclear-enriched transcript 2 (NEAT2), located on chromosome 11q13, is a long inter-genic non-coding RNA (lincRNA) with >8,000 nts.10 It was reported that MALAT1 is expressed abnormally and participated in the regulation of proliferation, migration, invasion, and apoptosis of many cancers,11 such as non-small-cell lung cancer,12 ESCC,13 gastric cancer,14 and hepatocellular carcinoma.15 Single nucleotide polymorphisms (SNPs) were well-recognized to directly regulate lncRNAs expression and alter the function of their corresponding lncRNAs.16–18 Poly morphisms of MALAT1 had been reported to be associated with susceptibility to pulmonary arterial hypertension,19 coronary atherosclerotic heart disease,20 onset of congenital heart disease,21 and colorectal cancer.22 However, whether the polymorphisms of MALAT1 play any role in the risk of ESCC remains unknown. Considering that upregulation of lncRNA MALAT1 contributed to proliferation and metastasis in ESCC,13 we performed a case-control study in the Chinese population to identify the association between MALAT1 polymorphisms and risk of ESCC.

Patients and methods

Study patients

A total of 245 ESCC patients diagnosed by pathology were consecutively recruited from Qilu Hospital of Shandong University from June to December 2017. Subjects diagnosed with more than one primary tumor were excluded from the study. Four hundred and ninety controls were selected from the physical examination center and matched to the ESCC patients by age (±5 years) and gender during the same time period. All participants were genetically unrelated. Data on basic characteristics (eg, age and gender) and environmental exposure (eg, smoking status and alcohol use) were obtained using face-to-face questionnaires and from patient records. Each participant donated 2 mL of venous blood willingly and provided informed consent to participate in the study. The study was conducted in accordance with the Declaration of Helsinki and approved by the Ethics Committee of Qilu Hospital.

SNP selection and genotyping

SNPs in the MALAT1 genes were selected on the basis of the 1000 Genomes database (http://browser.1000genomes.org/Homo_sapiens/UserData/Haploview) and the software Haploview 4.2. Criteria of minor allele frequency (MAF) >0.05 was set to obtain the tag SNPs in the Chinese population. Ultimately, four candidate SNPs were chosen: rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G. Genomic DNA was extracted from 2 mL of peripheral blood using a DNA Blood Mini Kit (#51104 QIAamp DNA Blood Mini Kit; Qiagen, NV, Venlo, the Netherlands) under the guidance of the manufacturer’s protocol. Genotyping for the SNPs was done by using the TaqMan allelic discrimination assay on LightCycler 480 II system (Hoffman-La Roche Ltd., Basel, Switzerland). The primers used for amplification are shown in Table S1, which were self-designed by Primer Express 3.0 (Thermo Fisher Scientific, Waltham, MA, USA). Genotyping was performed blindly and the results were analyzed by using Sequencher Software (version 5.4.5).

Statistical analysis

The goodness-of-fit chi-squared test was used to test Hardy–Weinberg equilibrium (HWE) of SNPs among the control subjects. To determine the differences in the distribution of basic characteristics between the patients and controls, the selected exposure variables were evaluated using chi-squared tests. The association between MALAT1 polymorphisms and risk of ESCC was examined by computing the ORs and 95% CIs using logistic regression analysis and adjusting for smoking status and alcohol use. Besides presenting P-values, the false discovery rate (FDR) was also analyzed using the Benjamini and Hochberg method.23 Since the main design of our study was to find the potential association between MALAT1 polymorphisms and risk of ESCC and considering the number of samples and SNPs that were included in our research, we set the FDR cutoff for noteworthy SNPs at 25% level. Statistical analysis was performed with SPSS 17.0 (SPSS Inc., Chicago, IL, USA).

Results

Basic characteristics

Locus information regarding MALAT1 polymorphisms and MAF in controls is listed in Table S1. Results showed that the distribution of MALAT1 rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G genotypes in controls agreed with HWE (P>0.05). Table S2 shows the basic characteristics of the 245 ESCC patients and 490 controls. Age and gender were not significantly different between the case and control groups (P=0.999, P=0.999), which indicated that these groups matched well with respect to these parameters. There was also no significant difference in the smoking status (P=0.439). However, the proportion of drinking was significantly higher in the case group compared with controls (P=0.012).

Association of MALAT1 rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G polymorphisms with ESCC risk

The genotype frequencies of MALAT1 rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G polymorphisms are listed in Table 1. After adjusting for smoking status and alcohol use, logistic regression analysis indicated that rs3200401 C > T significantly increased the risk of ESCC (CT vs CC: adjusted OR =1.59, 95% CI =1.07–2.35, P=0.021; TT vs CC: adjusted OR =2.27, 95% CI =1.04–4.96, P=0.039; dominant model [CT+TT vs CC]: OR =1.68, 95% CI =1.16–2.43, P=0.006). The significance remained even after FDR correction (FDR =0.168, 0.208, 0.096, respectively). However, rs1122709 C > G, rs664589 C > G, and rs619586 A > G polymorphisms were not statistically associated with ESCC risk (P>0.05).
Table 1

Logistic regression analysis for associations between selected SNPs and risk of ESCC

GenotypeCasesControlsP-valueaCrude ORa (95% CI)P-valuebAdjusted ORb (95% CI)
rs3200401
 CC148338RefRef
 CT791330.017*1.60 (1.09–2.35)0.021*,a1.59 (1.07–2.35)
 TT18190.026*2.39 (1.11–5.14)0.039*,b2.27 (1.04–4.96)
Dominant
 CC148338RefRef
 CT+TT971520.004*1.70 (1.18–2.45)0.006*,c1.68 (1.16–2.43)
Recessive
 CC+CT227471RefRef
 TT18190.0592.06 (0.97–4.36)0.0841.96 (0.91–4.20)
rs1122709
 CC123269RefRef
 CG1051980.5581.11 (0.78–1.57)0.5741.11 (0.78–1.57)
 GG17230.0712.07 (0.94–4.57)0.0922.01 (0.89–4.52)
Dominant
 CC123269RefRef
 CG+GG1222210.3441.18 (0.84–1.65)0.3701.17 (0.83–1.65)
Recessive
 CC+CG228467RefRef
 GG17230.0860.51 (0.23–1.10)0.1100.52 (0.24–1.16)
rs664589
 CC106205RefRef
 CG1172360.3511.37 (0.71–2.62)0.4661.28 (0.66–2.50)
 GG22490.6561.15 (0.62–2.16)0.8321.07 (0.56–2.04)
Dominant
 CC106205RefRef
 CG+GG1392850.3101.21 (0.84–1.74)0.3251.21 (0.83–1.76)
Recessive
 CC+CG223441RefRef
 GG22490.5100.81 (0.44–1.50)0.6640.87 (0.47–1.63)
rs619586
 AA85177RefRef
 AG1322480.6190.90 (0.58–1.38)0.6910.92 (0.59–1.41)
 GG28650.7990.93 (0.51–1.68)0.9681.01 (0.55–1.87)
Dominant
 AA85177RefRef
 AG+GG1603130.6260.90 (0.60–1.36)0.7550.94 (0.62–1.42)
Recessive
 AA+AG217425RefRef
 GG28650. 9640.99 (0.58–1.69)0.8141.07 (0.62–1.85)

Notes:

P-value and crude ORa: conditional logistic regression.

P-value and adjusted ORb: conditional logistic regression with adjustment for smoking status and alcohol use.

Significant P-values (P<0.05). Significant P-values (FDR <0.25) are given in bold after being adjusted by FDR; FDR = *,a0.168, *,b0.208, *,c0.096.

Abbreviations: ESCC, esophageal squamous cell carcinoma; SNP, single nucleotide polymorphism; FDR, false discovery rate.

Association of MALAT1 rs3200401 C > T, rs1122709 C > G, rs664589 C > G, and rs619586 A > G polymorphisms with ESCC risk in different stratification groups

As is shown in Table 2, stratification between rs3200401 and risk of ESCC according to smoking status and alcohol use was further conducted. In never drinking subgroup, after adjusting for smoking status, we found that rs3200401 CT/TT increased the risk of ESCC compared with CC genotype (TT vs CC: adjusted OR =2.34, 95% CI =1.02–5.34, P=0.044; CT/TT vs CC: adjusted OR =1.52, 95% CI =1.02–2.26, P=0.041 [Table 2]), which passed the correction of FDR (FDR =0.208, 0.208, respectively).
Table 2

Stratified analysis for associations between variant genotype of rs3200401 and ESCC risk

Variablesrs3200401 C > T (ESCC/control)Adjusted OR (95% CI); P-value
CCCTTTCT+TTCCCTTTCT+TTTT vs (CT+CC)
Smoking
 Ever46/9826/374/330/401.001.69 (0.88–3.26)0.1162.79 (0.54–14.38)0.2201.78 (0.95–3.35)0.0732.36 (0.47–11.95)0.298
 Never102/24053/9614/1667/1121.000.49 (0.23–1.03)0.0600.63 (0.29–1.40)0.2551.41 (0.96–2.06)0.0781.90 (0.90–3.99)0.091
Drinking
 Ever59/10030/386/636/441.000.52 (0.16–1.75)0.2930.73 (0.21–2.58)0.6290.68 (0.39–1.20)0.1801.72 (0.52–5.67)0.372
 Never89/23849/9512/1361/101.001.40 (0.92–2.14)0.1222.34 (1.02–5.34)0.044*,a1.52 (1.02–2.26)0.041*,b2.10 (0.93–4.74)0.074

Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors).

Significant values (P<0.05). Significant P-values (FDR <0.25) are given in bold after being adjusted by FDR; FDR = *,a0.208, *,b0.208.

Abbreviations: ESCC, esophageal squamous cell carcinoma; FDR, false discovery rate.

The genotype frequencies of MALAT1 rs619586 A > G polymorphism in the subgroup analysis are shown in Table 3. In ever drinking subgroup, after adjusting for smoking status, rs619586 GG genotype was associated with a decreased risk of ESCC (GG vs AA: adjusted OR =0.38, 95% CI =0.15–0.99, P=0.049 [Table 3]). However, the analysis did not pass the FDR correction (FDR =0.432).
Table 3

Stratified analysis for associations between variant genotype of rs619586 and ESCC risk

Variablesrs619586 A > G (ESCC/control)Adjusted OR (95% CI); P-value
AAAGGGAG+GGAAAGGGAG + GGGG vs (AG+AA)
Smoking
 Ever25/3943/748/2551/991.000.68 (0.34–1.34)0.2610.41 (0.15–1.12)0.0810.61 (0.32–1.18)0.1420.53 (0.22–1.30)0.165
 Never60/13889/17420/40109/2141.001.18 (0.79–1.75)0.4151.16 (0.62–2.14)0.6451.18 (0.80–1.72)0.4071.05 (0.59–1.86)0.864
Drinking
 Ever31/4256/788/2464/1021.000.84 (0.46–1.52)0.5600.38 (0.15–0.99)0.049*0.73 (0.41–1.31)0.2892.32 (0.98–5.52)0.057
 Never54/13576/17020/4196/2111.001.12 (0.74–1.71)0.5851.30 (0.69–2.43)0.4191.16 (0.78–1.72)0.4781.21 (0.68–2.16)0.516

Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors).

Significant values (P<0.05). No significant P-values (FDR <0.25) are found after being adjusted by FDR.

Abbreviations: ESCC, esophageal squamous cell carcinoma; FDR, false discovery rate.

In addition, after logistic regression analysis, rs1122709 G > C and rs664589 G > C polymorphisms were not associated with the risk of ESCC in any subgroup (Tables S3 and S4).

Discussion

The pathogenesis of ESCC is complex, and multiple factors may contribute to the etiology of ESCC. Our study indicated that MALAT1 polymorphisms were associated with a risk of ESCC in a Chinese population. We identified that rs3200401, a tag SNP of MALAT1, was a pivotal genetic risk factor against ESCC. Stratified analysis showed that in never drinking subgroup, rs3200401 TT and CT/TT genotype increased the risk of ESCC compared with CC genotype after adjusting for smoking status. All the results remained statistically significant after correction for FDR. In addition, in ever drinking subgroup, rs619586 GG genotype was associated with decreased risk of ESCC compared with AA, while the significance disappeared after adjusting for FDR. Further investigation was required to explore whether T allele of rs3200401 and G allele of rs619586 regulated MALAT1 expression in vivo. These results indicated that rs3200401 T allele and rs619586 G allele may be the key factors to influence the risk of ESCC. MALAT1 was found to be overexpressed in numerous types of cancers including ESCC,13 and MALAT1 showed significant effects on proliferation, migration, invasion, and apoptosis of cancer cells.24 In clinical application, the upregulation of MALAT1 in several types of cancer tissues and its association with biological behavior of tumor cells made it a potential diagnostic or predictive biomarker.6,12,25–27 MALAT1 co-localizes with SC35 splicing domains, indicating that it may function in RNA metabolism.28 MALAT1 was found to participate in mRNA processing, splicing, and exporting.29 Except for RNA spicing, MALAT1 functioned by regulating the expression of many pivotal genes, including melanoma inhibitory activity 2, roundabout 1, glypican 6, latrophilin 2, CUB domain containing protein 1 ATP-binding cassette, subfamily A, and member 1 in lung cancer,30 and caspase-3, caspase-8, Bcl-2, and Bcl-2-associated X protein in cervical cancer cells,31 thus promoting the development of cancer. In addition, MALAT1 interacted with many other genes and was involved in several signaling pathways (ATM-CHK2 pathway,13 PI3K-AKT pathway,31,32 and extracellular-signal-regulated kinase/mitogen-activated protein kinase pathway33), thereby playing an important role in the progression of cancer cells. However, studies reporting on the underlying mechanisms are very few. Although our study found that rs3200401 C > T polymorphism was associated with increased risk of ESCC, it was also reported to be associated with better survival in advanced lung adenocar-cinomas.34 The opposite role of rs32000401 polymorphism in different cancers remains to be illuminated for detailed mechanism. It was reported that the interaction between lncRNAs and other molecules was probably associated with their structure, which might be altered by the polymorphisms of lncRNAs.35 The rs3200401 C > T variant is located at the region M of MALAT1 (6,008–7,011 nts), one of the binding sites to SRSF2.36 In addition, SRSF2 and phosphorylated SRSF2 were reported to be correlated with aggressive features of lung adenocarcinoma.37 In a recent report, lncRNA SNP database was used to predict potential functions of rs3200401, suggesting that the C > T variation of rs3200401 causes 1.62 kcal/mol minimal free energy (ΔG) change and that it may alter the structural features of MALAT1, resulting in weakened interaction between MALAT1 and its binding protein SRSF2.34 Besides, MALAT1 was reported to be associated with phosphorylation of SRSF2, interaction with SR proteins as a “molecular sponge,” and regulation of the alternative splicing of pre-mRNAs.28,38 Taken together, it was biologically possible that SNP rs3200401 C > T may alter the expression levels of cancer-associated genes, thus participating in the carcinogenesis and cancer development. A previous report suggested that rs619586 A > G was associated with decreased cancer risk in a meta-analysis study,39 which was in line with our findings. In pulmonary arterial hypertension, MALAT1 with rs619586 G allele was reported to function as a competing endogenous RNA which exhibits more affinity toward miR-214, consequently inhibiting the vascular endothelial cell proliferation and migration in vitro by shortening S–M phase transition.19 Nevertheless, more studies are required to clarify the mechanism as to how SNPs of MALAT1 functioned in the development of cancers. Several limitations existed in this study. First, because all the participants were selected from a local hospital, there was a potential possibility of selection and information bias. Therefore, we used stratified analysis as compensation. Second, the sample size of our study was relatively small, which might have impacted the statistical power. Furthermore, for the stratification analysis, a larger sample size including more areas is required to fully validate the results.

Conclusion

Our findings suggest that MALAT1 rs3200401 C > T polymorphism is associated with an increased risk of ESCC in a Chinese population, and that rs3200401 polymorphism could be a novel and effective predictive biomarker for ESCC. Also, there is a minor possibility that rs619586 A > G polymorphisms may be associated with decreased risk of ESCC. Further studies in diverse ethnicities and functional analysis are required to confirm our findings.

Ethics approval and informed consent

All participants were informed about the purpose of the study and all signed the written informed consent. The study was approved by the Ethics Committee of Qilu Hospital of Shandong University and the study was conducted in accordance with the Declaration of Helsinki. Primary information of selected SNPs for lncRNA MALAT1 Abbreviations: HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; SNP, single nucleotide polymorphism; lncRNA, long non-coding RNA. Selected characteristics in ESCC cases and controls Notes: Two-sided chi-squared test. Significant values (P<0.05). Abbreviation: ESCC, esophageal squamous cell carcinoma. Stratified analysis for associations between variant genotype of rs1122709 and ESCC risk Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors). Significant values (P<0.05). Abbreviation: ESCC, esophageal squamous cell carcinoma. Stratified analysis for associations between variant genotype of rs664589 and ESCC risk Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors). Significant values (P<0.05). Abbreviation: ESCC, esophageal squamous cell carcinoma.
Table S1

Primary information of selected SNPs for lncRNA MALAT1

SNPPrimerPrimer sequenceBase changeLocation in the chromosomeMAF in our controlsHWE

rs3200401ForwardGGGTGCCTGC > T65,504,3610.1740.201
TGGGGTTTT
ReverseCCACCACCAGA
AATGAACAAAA
rs11227209ForwardTTTTAGCAACC > G65,497,9600.2490.075
GCAGAAGCCC
ReverseTGTTATGCCTGG
TTAGGTATGAGC
rs664589ForwardCTGTTGGCACC > G65,501,8780.3410.178
GAACACCTTC
ReverseTGGTACACCCA
GTGGCTCATA
rs619586ForwardTGGGAGCAAA > G65,498,6980.3860.132
GTCGCAGGA
ReverseGAGAACAACT
CGCATCACCG

Abbreviations: HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; SNP, single nucleotide polymorphism; lncRNA, long non-coding RNA.

Table S2

Selected characteristics in ESCC cases and controls

VariablesCases (N=245, n [%])Controls (N=490, n [%])P-valuea
Age (years)61.50 (39–79)62.00 (39–79)0.999
≥6014056.91%28057.14%
<6010543.09%21042.86%
Gender0.999
 Male18575.61%37075.51%
 Female6024.39%12024.49%
Smoking0.439
 Ever7630.89%13828.16%
 Never16969.11%35271.84%
Drinking0.012*
 Ever9538.62%14429.39%
 Never15061.38%34670.61%

Notes:

Two-sided chi-squared test.

Significant values (P<0.05).

Abbreviation: ESCC, esophageal squamous cell carcinoma.

Table S3

Stratified analysis for associations between variant genotype of rs1122709 and ESCC risk

Variablesrs1122709 C > G (ESCC/control)Adjusted OR (95% CI); P-value
CCCGGGCG+GGCCCGGGCG+GGGG vs (CG+CC)
Smoking
 Ever37/8532/497/439/531.001.30 (0.69–2.42)0.4173.33 (0.86–12.97)0.0831.45 (0.80–2.64)0.2232.99 (0.79–11.36)0.108
 Never86/18473/14910/1983/1681.001.04 (0.71–1.52)0.8371.12 (0.50–2.50)0.7920.95 (0.66–1.38)0.7981.10 (0.50–2.41)0.822
Drinking
 Ever49/18240/556/746/621.001.14 (0.66–1.99)0.6401.25 (0.39–4.06)0.7081.15 (0.68–1.97)0.5991.18 (0.37–3.74)0.776
 Never74/18765/14311/1676/1581.001.09 (0.73–1.63)0.6781.62 (0.72–3.68)0.2471.14 (0.78–1.69)0.5000.64 (0.29–1.42)0.275

Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors).

Significant values (P<0.05).

Abbreviation: ESCC, esophageal squamous cell carcinoma.

Table S4

Stratified analysis for associations between variant genotype of rs664589 and ESCC risk

Variablesrs664589 C > G (ESCC/control)Adjusted OR (95% CI); P-value
CCCGGGCG+GGCCCGGGCG+GGGG vs (CG+CC)
Smoking
 Ever37/6731/628/939/711.000.95 (0.51–1.78)0.8801.43 (0.48–4.27)0.5231.02 (0.56–1.85)0.9481.46 (0.51–4.20)0.482
 Never69/13886/17414/40100/2141.001.42 (0.72–2.79)0.3091.41 (0.73–2.74)0.3060.94 (0.65–1.37)0.7520.71 (0.37–1.34)0.287
Drinking
 Ever39/5747/709/1756/871.001.16 (0.65–2.05)0.6200.86 (0.34–2.19)0. 7571.10 (0.63–1.90)0.7430.80 (0.33–1.91)0.611
 Never67/14870/16613/3283/1981.000.91 (0.61–1.37)0.6610.85 (0.42–1.72)0.6420.90 (0.61–1.33)0.6040.87 (0.45–1.75)0.727

Notes: P-value and adjusted OR: binary logistic regression with adjustment for smoking status and alcohol use (besides accordingly stratified factors).

Significant values (P<0.05).

Abbreviation: ESCC, esophageal squamous cell carcinoma.

  38 in total

1.  Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

Authors:  Ryu Miyagawa; Keiko Tano; Rie Mizuno; Yo Nakamura; Kenichi Ijiri; Randeep Rakwal; Junko Shibato; Yoshinori Masuo; Akila Mayeda; Tetsuro Hirose; Nobuyoshi Akimitsu
Journal:  RNA       Date:  2012-02-21       Impact factor: 4.942

Review 2.  Nuclear speckles.

Authors:  David L Spector; Angus I Lamond
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

Review 3.  Evolution and functions of long noncoding RNAs.

Authors:  Chris P Ponting; Peter L Oliver; Wolf Reik
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation.

Authors:  Ming-chun Lai; Zhe Yang; Lin Zhou; Qian-qian Zhu; Hai-yang Xie; Feng Zhang; Li-ming Wu; Lei-ming Chen; Shu-sen Zheng
Journal:  Med Oncol       Date:  2011-06-16       Impact factor: 3.064

5.  Global cancer statistics.

Authors:  Ahmedin Jemal; Freddie Bray; Melissa M Center; Jacques Ferlay; Elizabeth Ward; David Forman
Journal:  CA Cancer J Clin       Date:  2011-02-04       Impact factor: 508.702

6.  The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.

Authors:  Vidisha Tripathi; Jonathan D Ellis; Zhen Shen; David Y Song; Qun Pan; Andrew T Watt; Susan M Freier; C Frank Bennett; Alok Sharma; Paula A Bubulya; Benjamin J Blencowe; Supriya G Prasanth; Kannanganattu V Prasanth
Journal:  Mol Cell       Date:  2010-09-24       Impact factor: 17.970

7.  MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer.

Authors:  Ping Ji; Sven Diederichs; Wenbing Wang; Sebastian Böing; Ralf Metzger; Paul M Schneider; Nicola Tidow; Burkhard Brandt; Horst Buerger; Etmar Bulk; Michael Thomas; Wolfgang E Berdel; Hubert Serve; Carsten Müller-Tidow
Journal:  Oncogene       Date:  2003-09-11       Impact factor: 9.867

8.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

9.  Abnormal expression of the pre-mRNA splicing regulators SRSF1, SRSF2, SRPK1 and SRPK2 in non small cell lung carcinoma.

Authors:  Stephanie Gout; Elisabeth Brambilla; Asma Boudria; Romain Drissi; Sylvie Lantuejoul; Sylvie Gazzeri; Beatrice Eymin
Journal:  PLoS One       Date:  2012-10-10       Impact factor: 3.240

10.  Landscape of transcription in human cells.

Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  13 in total

1.  Meta-analysis of the association between MALAT1 rs619586 A>G polymorphism and cancer risk.

Authors:  Wenwen Ni; Xinyu Wang; Yuqi Sun; Xueren Gao
Journal:  J Int Med Res       Date:  2020-07       Impact factor: 1.671

2.  miR-124-3p availability is antagonized by LncRNA-MALAT1 for Slug-induced tumor metastasis in hepatocellular carcinoma.

Authors:  Rong-Jun Cui; Jia-Lin Fan; Yu-Cui Lin; Yu-Jia Pan; Chi Liu; Jia-Hui Wan; Wei Wang; Zheng-Yuan Jiang; Xiu-Lan Zheng; Jie-Bing Tang; Xiao-Guang Yu
Journal:  Cancer Med       Date:  2019-08-29       Impact factor: 4.452

3.  Association of long noncoding RNA MALAT1 polymorphisms with gastric cancer risk in Korean individuals.

Authors:  Jang Hee Hong; Eun-Heui Jin; In Ae Chang; Hyojin Kang; Sang-Il Lee; Jae Kyu Sung
Journal:  Mol Genet Genomic Med       Date:  2020-11-02       Impact factor: 2.183

4.  The Relationship between MALAT1 Polymorphism rs3200401 C > T and the Risk of Overall Cancer: A Meta-Analysis.

Authors:  Keming Li; Zhuo Han; Jinyu Wu; Hua Ye; Guiying Sun; Jianxiang Shi; Jianying Zhang; Peng Wang
Journal:  Medicina (Kaunas)       Date:  2022-01-25       Impact factor: 2.430

5.  Significance of the lncRNAs MALAT1 and ANRIL in occurrence and development of glaucoma.

Authors:  Guoqiang Huang; Dong Liang; Lidan Luo; Chenghong Lan; Chengfeng Luo; Hongwang Xu; Jiangfeng Lai
Journal:  J Clin Lab Anal       Date:  2022-01-14       Impact factor: 2.352

6.  Long noncoding RNA MALAT1 polymorphism predicts MACCEs in patients with myocardial infarction.

Authors:  Tong Zhang; Jun-Yi Luo; Fen Liu; Xue-He Zhang; Fan Luo; Yi-Ning Yang; Xiao-Mei Li
Journal:  BMC Cardiovasc Disord       Date:  2022-04-07       Impact factor: 2.298

7.  Combined Impacts of Genetic Variants of Long Non-Coding RNA MALAT1 and the Environmental Carcinogen on the Susceptibility to and Progression of Oral Squamous Cell Carcinoma.

Authors:  Yi-Fang Ding; Yu-Ching Wen; Chun-Yi Chuang; Chiao-Wen Lin; Yi-Chieh Yang; Yu-Fan Liu; Wei-Min Chang; Lun-Ching Chang; Shun-Fa Yang; Ming-Hsien Chien
Journal:  Front Oncol       Date:  2021-06-29       Impact factor: 6.244

8.  Association of MALAT1 and PVT1 Variants, Expression Profiles and Target miRNA-101 and miRNA-186 with Colorectal Cancer: Correlation with Epithelial-Mesenchymal Transition.

Authors:  Abdullah F Radwan; Olfat G Shaker; Noha A El-Boghdady; Mahmoud A Senousy
Journal:  Int J Mol Sci       Date:  2021-06-07       Impact factor: 5.923

9.  Genetic Variants of lncRNA MALAT1 Exert Diverse Impacts on the Risk and Clinicopathologic Characteristics of Patients with Hepatocellular Carcinoma.

Authors:  Lan-Ting Yuan; Jer-Hwa Chang; Hsiang-Lin Lee; Yi-Chieh Yang; Shih-Chi Su; Chien-Liang Lin; Shun-Fa Yang; Ming-Hsien Chien
Journal:  J Clin Med       Date:  2019-09-06       Impact factor: 4.241

10.  Association of polymorphisms in MALAT1 with the risk of endometrial cancer in Southern Chinese women.

Authors:  Guange Chen; Mingyao Zhang; Zongwen Liang; Sailing Chen; Feng Chen; Jiawei Zhu; Manman Zhao; Jing He; Wenfeng Hua; Ping Duan
Journal:  J Clin Lab Anal       Date:  2019-12-27       Impact factor: 2.352

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