Literature DB >> 20926517

Nuclear speckles.

David L Spector1, Angus I Lamond.   

Abstract

Nuclear speckles, also known as interchromatin granule clusters, are nuclear domains enriched in pre-mRNA splicing factors, located in the interchromatin regions of the nucleoplasm of mammalian cells. When observed by immunofluorescence microscopy, they usually appear as 20-50 irregularly shaped structures that vary in size. Speckles are dynamic structures, and their constituents can exchange continuously with the nucleoplasm and other nuclear locations, including active transcription sites. Studies on the composition, structure, and dynamics of speckles have provided an important paradigm for understanding the functional organization of the nucleus and the dynamics of the gene expression machinery.

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Year:  2011        PMID: 20926517      PMCID: PMC3039535          DOI: 10.1101/cshperspect.a000646

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  110 in total

1.  Proteomic analysis of interchromatin granule clusters.

Authors:  Noriko Saitoh; Chris S Spahr; Scott D Patterson; Paula Bubulya; Andrew F Neuwald; David L Spector
Journal:  Mol Biol Cell       Date:  2004-05-28       Impact factor: 4.138

2.  Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling.

Authors:  K Zhao; W Wang; O J Rando; Y Xue; K Swiderek; A Kuo; G R Crabtree
Journal:  Cell       Date:  1998-11-25       Impact factor: 41.582

Review 3.  The superfamily of arginine/serine-rich splicing factors.

Authors:  X D Fu
Journal:  RNA       Date:  1995-09       Impact factor: 4.942

4.  A subset of poly(A) polymerase is concentrated at sites of RNA synthesis and is associated with domains enriched in splicing factors and poly(A) RNA.

Authors:  W Schul; R van Driel; L de Jong
Journal:  Exp Cell Res       Date:  1998-01-10       Impact factor: 3.905

5.  Nuclear domains.

Authors:  D L Spector
Journal:  J Cell Sci       Date:  2001-08       Impact factor: 5.285

6.  CrkRS: a novel conserved Cdc2-related protein kinase that colocalises with SC35 speckles.

Authors:  T K Ko; E Kelly; J Pines
Journal:  J Cell Sci       Date:  2001-07       Impact factor: 5.285

7.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

8.  The ER repeat protein YT521-B localizes to a novel subnuclear compartment.

Authors:  O Nayler; A M Hartmann; S Stamm
Journal:  J Cell Biol       Date:  2000-09-04       Impact factor: 10.539

9.  Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains.

Authors:  D B Bregman; L Du; S van der Zee; S L Warren
Journal:  J Cell Biol       Date:  1995-04       Impact factor: 10.539

10.  Nuclear organisation of NIPP1, a regulatory subunit of protein phosphatase 1 that associates with pre-mRNA splicing factors.

Authors:  L Trinkle-Mulcahy; P Ajuh; A Prescott; F Claverie-Martin; S Cohen; A I Lamond; P Cohen
Journal:  J Cell Sci       Date:  1999-01       Impact factor: 5.285

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  321 in total

Review 1.  Cell-context dependent TCF/LEF expression and function: alternative tales of repression, de-repression and activation potentials.

Authors:  Catherine D Mao; Stephen W Byers
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2011       Impact factor: 1.807

Review 2.  Localization and dynamics of nuclear speckles in plants.

Authors:  Anireddy S N Reddy; Irene S Day; Janett Göhring; Andrea Barta
Journal:  Plant Physiol       Date:  2011-11-01       Impact factor: 8.340

3.  The genomic binding sites of a noncoding RNA.

Authors:  Matthew D Simon; Charlotte I Wang; Peter V Kharchenko; Jason A West; Brad A Chapman; Artyom A Alekseyenko; Mark L Borowsky; Mitzi I Kuroda; Robert E Kingston
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

4.  Malat1 is not an essential component of nuclear speckles in mice.

Authors:  Shinichi Nakagawa; Joanna Y Ip; Go Shioi; Vidisha Tripathi; Xinying Zong; Tetsuro Hirose; Kannanganattu V Prasanth
Journal:  RNA       Date:  2012-06-20       Impact factor: 4.942

5.  Distribution of 5'-trimethylguanosine capped small nuclear RNAs in extrachromosomal oocyte nuclear domains of the laboratory insect, Tribolium castaneum.

Authors:  D S Bogolyubov; F M Batalova; A M Kiselyov; V N Parfenov
Journal:  Dokl Biol Sci       Date:  2012-07-05

Review 6.  The exon junction complex as a node of post-transcriptional networks.

Authors:  Hervé Le Hir; Jérôme Saulière; Zhen Wang
Journal:  Nat Rev Mol Cell Biol       Date:  2015-12-16       Impact factor: 94.444

7.  Organizational metrics of interchromatin speckle factor domains: integrative classifier for stem cell adhesion & lineage signaling.

Authors:  Sebastián L Vega; Anandika Dhaliwal; Varun Arvind; Parth J Patel; Nick R M Beijer; Jan de Boer; N Sanjeeva Murthy; Joachim Kohn; Prabhas V Moghe
Journal:  Integr Biol (Camb)       Date:  2015-04       Impact factor: 2.192

8.  The host protein CLUH participates in the subnuclear transport of influenza virus ribonucleoprotein complexes.

Authors:  Tomomi Ando; Seiya Yamayoshi; Yuriko Tomita; Shinji Watanabe; Tokiko Watanabe; Yoshihiro Kawaoka
Journal:  Nat Microbiol       Date:  2016-05-16       Impact factor: 17.745

9.  Influenza virus mRNA trafficking through host nuclear speckles.

Authors:  Amir Mor; Alexander White; Ke Zhang; Matthew Thompson; Matthew Esparza; Raquel Muñoz-Moreno; Kazunori Koide; Kristen W Lynch; Adolfo García-Sastre; Beatriz M A Fontoura
Journal:  Nat Microbiol       Date:  2016-05-27       Impact factor: 17.745

10.  Dynamics of the association of heat shock protein HSPA6 (Hsp70B') and HSPA1A (Hsp70-1) with stress-sensitive cytoplasmic and nuclear structures in differentiated human neuronal cells.

Authors:  Sadek Shorbagi; Ian R Brown
Journal:  Cell Stress Chaperones       Date:  2016-08-16       Impact factor: 3.667

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