| Literature DB >> 31019874 |
Perumal Venkatesan1, Margarita Cerón1, Enrique Pérez-Gutiérrez1, Armando E Castillo1, Subbiah Thamotharan2, Fernando Robles3, Maxime A Siegler4, M Judith Percino1.
Abstract
Experimental and theoretical insights into the nature of intermolecular interactions and their effect on optical properties of 1-allyl-4-(1-cyano-2-(4-dialkylaminophenyl)vinyl)pyridin-1-ium bromide salts (I and II) are reported. A comparison of optical properties in solution and in the solid-state of theEntities:
Keywords: DFT calculation; bromide salts; intermolecular interactions; optical properties; quaternary salts
Year: 2019 PMID: 31019874 PMCID: PMC6470380 DOI: 10.1002/open.201900061
Source DB: PubMed Journal: ChemistryOpen ISSN: 2191-1363 Impact factor: 2.911
Scheme 1The chemical diagram of (Z)‐4‐(4‐(1‐cyano‐2‐(4‐dimethylamino)phenyl)vinyl)phenyl)‐1‐methylpyridin‐1‐ium hexafluorophosphate8 (a) and (Z)‐4‐(4‐(1‐cyano‐2‐(4‐(diphenylamino)phenyl)vinyl)phenyl)‐1‐methyl‐pyridin‐1‐ium hexafluorophosphate9 (b).
Scheme 2The push‐pull ethylene molecule.16
Scheme 3Chemical diagram for precursor compounds (Z)‐3‐[4‐(dimethylamino)phenyl]‐2‐(4‐pyridyl)prop‐2‐enenitrile (Ia) and (Z)‐3‐[4‐(diphenylamino)phenyl]‐2‐(4‐pyridyl)prop‐2‐enenitrile (IIa).
Scheme 4Chemical diagram of (Z)‐1‐allyl‐4‐(1‐cyano‐2‐(4‐(dimethylamino)phenyl)vinyl)pyridin‐1‐ium bromide(I) and (Z)‐1‐allyl‐4‐(1‐cyano‐2‐(4‐(diphenylamino)phenyl)vinyl)pyridin‐1‐ium bromide (II).
Scheme 5Synthesis of salts I–II and Ia–IIa.
Crystal data and refinement parameters for I–II.
| Parameters | I | II |
|---|---|---|
| Empirical formula | C19H20N3 +, Br− | C29H24N3 +, Br− |
| Color, Morphology | dark red, block | red, thick plate |
| Formula weight | 370.29 | 494.42 |
| T(K) | 110 | 110 |
| Wavelength (Å) | 1.54178 | 0.71073 |
| Crystal system | Monoclinic | Monoclinic |
| Space group |
|
|
| a (Å) | 7.45974(14) | 18.8430 (5) |
| b (Å) | 24.9280(4) | 13.1737 (4) |
| c (Å) | 9.66801(19) | 9.7074 (3) |
|
| 90.00 | 90.00 |
|
| 106.020(2) | 95.804 (2) |
|
| 90.00 | 90.00 |
|
| 1728.01(6) | 2397.33 (12) |
| Z | 4 | 4 |
| Dx (g/m3) | 1.423 | 1.370 |
|
| 3.25 | 1.74 |
| F (000) | 760 | 1016 |
| Crystal size (mm) | 0.21×0.17×0.15 | 0.40×0.27×0.08 |
| No. of measured, independent and observed [ | 11417, 3378, 3001 | 32066, 5517, 4826 |
|
| 0.0271, 0.0317 | 0.0264, 0.0341 |
|
| 0.0694, 0.0722 | 0.0638, 0.671, |
| Goodness‐of‐fit | 1.043 | 1.040 |
| Largest difference in peak and hole (e Å−3) | 0.310 and −0.374 | 0.36 and −0.34 |
| CCDC number | 1863461 | 1863462 |
Figure 1Displacement ellipsoidal plots (at the 50 % probability level) of I–II with atom‐numbering scheme.
Figure 2(a) Overlay of I (green) and Ia (molecule A in form I:purple; molecule B in form I:magenta and molecule in form II:red); (b) overlay of II and IIa; (c) overlay of I and II (The cationic moiety of I (green) and II(orange) is only used for structural superimposition).
The selected torsion angle in I–II and Ia–IIa (θ, °).
| Atoms | Compounds | |||
|---|---|---|---|---|
| I | Ia | II | IIa | |
| C5−C6−C9−C11 | −176.0(2) | −178.4(1) | 171.9(2) | −145.6(2) |
| C7−C6−C9−C10 | −176.8(2) | −177.5(1) | 171.5(2) | −151.6(2) |
| C9−C11−C12−C13 | −5.7(4) | −7.0(2) | −7.5(3) | 20.5(3) |
| C9−C11−C12−C17 | 174.1(2) | 174.0(1) | 175.5(2) | −161.3(2) |
| C14−C15−N3−C18 | 5.6(3) | 2.4(2) | 37.6(2) | 31.9(2) |
| C14−C15−N3−C19/C24 | −176.8(2) | −173.8(1) | −148.4(2) | −149.6(1) |
| C16−C15−N3−C18 | −174.6(2) | −178.2(1) | −143.0(2) | −148.6(1) |
| C16−C15−N3−C19/C24 | 3.1(3) | 5.6(2) | 31.1(2) | 30.0(2) |
| C1−C2−C3−N1 | 115.5(2) | −129.6(2) | ||
| C2−C3−N1−C4 | 111.0(2) | −125.3(2) | ||
| C2−C3−N1−C8 | −66.1(2) | 57.1(2) | ||
Figure 3Absorbance spectra of I (a) and II (b) in CHCl3. Absorbance spectra of I (c) and II (d) in polar solvent and CHCl3.
Figure 4Solutions of the salts I and II in different solvents and UV spectra of them.
The calculated dipole moment (μ) value in Debye. (at the B3LYP/6‐311++G(d, p) level of theory).
| Solvent | Compound | |||
|---|---|---|---|---|
| I | Ia | II | IIa | |
| Chloroform | 23.06 | 11.71 | 21.28 | 9.54 |
| Methanol | 25.12 | 12.83 | 22.73 | 10.41 |
| Acetonitrile | 23.89 | 12.84 | 22.75 | 10.42 |
Figure 5Absorbance spectra of I and Ia in the solid‐state (a). Absorbance spectra of II and IIa in the solid‐state (b).
Figure 6Single crystals of I–II and powder materials of I–II and Ia–IIa.
Experimental and computed λabs, λexp (in nm) for I and II.
| I | II | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| λabs (DFT) | eV |
| Major transition (%) | λexp | λabs (DFT) | eV |
| Major transition (%) | λexp |
| Gas | |||||||||
| 685 | 1.809 | 0.001 | H‐1→L (96) | 692 | 1.792 | 0.001 | H‐1→L (96) | ||
| 668 | 1.854 | 0.020 | H‐2→L (62) | 673 | 1.841 | 0.018 | H‐2→L (62) | ||
| H→L (35) | H→L (34) | ||||||||
| 619 | 2.002 | 0.073 | H→L (61) | 627 | 1.976 | 0.096 | H→L (62) | ||
| H‐2→L (36) | H‐2→L (36) | ||||||||
| 427 | 2.903 | 0.669 | H‐3→L (78) | 475 | 2.609 | 0.844 | H‐3→L (96) | ||
| H→L+1 (20) | |||||||||
| 406 | 3.051 | 0.174 | H→L+1 (26) | 416 | 2.981 | 0.046 | H→L+1 (76) | ||
| H→L+2 (20) | |||||||||
Figure 7Electron‐density distributions for the frontier molecular orbitals of I–II calculated at the B3YLP/6‐311++G (d, p) level of theory in the gas phase. The orbitals plotted with isovalue=0.02 Å−3.
Figure 8The molecular orbital energy levels of I–II and their parent compounds (Ia–IIa; energy in eV. This energy levels are obtained from the optimized geometry in a vacuum with B3LYP/6‐311++G(d,p) level of theory).
Various intermolecular interactions observed in compounds I and II. (interaction energy in kcal mol−1; distance is the centroid‐centroid of the distance of molecules in Å; a and b are aromatic rings).
| Motif/ Dimer | Possible Interactions | Geometry (Å/°) | Symmetry code | Distance |
|
|
|
|
| Δ |
| ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| d(H⋅⋅⋅A) | d(D⋅⋅⋅A) | ∠ D−H⋅⋅⋅A | |||||||||||
| Cation⋅⋅⋅Anion interactions in I | |||||||||||||
| D1 | C7−H7⋅⋅⋅Br1− | 2.68 | 3.722 | 162 | 1/2+x, 1/2‐y, 1/2 +z | 4.272 | −66.9 | −12.3 | −4.0 | 5.8 | −77.4 | −76.28 | 1 |
| C11−H11⋅⋅⋅Br1− | 2.96 | 4.030 | 170 | ||||||||||
| D2 | C3−H3B⋅⋅⋅Br1− | 2.77 | 3.746 | 150 | x, y, z | 7.543 | −67.6 | −11.2 | −4.0 | 6.6 | −76.2 | −75.66 | 2 |
| C1−H1A⋅⋅⋅Br1− | 2.89 | 3.829 | 146 | 3 | |||||||||
| C8−H8⋅⋅⋅Br1− | 3.09 | 3.888 | 131 | ||||||||||
| D3 | C4−H4⋅⋅⋅Br1− | 2.62 | 3.579 | 147 | 1/2+x, 1/2‐y, 1/2‐z | 7.618 | −65.6 | −10.6 | −3.5 | 6.4 | −73.3 | −73.55 | 4 |
| C3−H3A⋅⋅⋅Br1− | 3.04 | 3.914 | 138 | ||||||||||
| D4 | C2−H2⋅⋅⋅Br1− | 3.00 | 3.772 | 129 | 1+x, y, z | 7.787 | −52.5 | −6.8 | −2.2 | 2.6 | −58.9 | −57.04 | |
| C1−H1B⋅⋅⋅Br1− | 3.12 | 3.817 | 123 | ||||||||||
| D5 | C19−H19B⋅⋅⋅Br1− | 2.78 | 3.838 | 165 | 3/2‐x, 1/2+y, 3/2‐z | 10.335 | −42.8 | −5.3 | −1.8 | 2.9 | −47.0 | −49.51 | 5 |
Figure 9Overall packing arrangement of I in (a) cationic molecules as double arrays and (b) the cation and anion arrangement in I.
Figure 10Part of the crystal packing of I showing the C16−H16⋅⋅⋅N2 and C19−H19 A⋅⋅⋅N2 interactions which link the molecules into a chain.
Figure 11The double helical packing arrangement of II.
Figure 12The arrangement of cations and anions in the crystal structure of (a) I and (b) II. Cations (green) and anions (brown) are shown as small green spheres. (interionic distance in Å).
The lattice energies of I–II and Ia–IIa in kcal mol−1.
| Compound | Ecoul | Epol | Edisp | Erep | Etot |
|---|---|---|---|---|---|
| I | −5.3 | −7.4 | −28.0 | 23.9 | −16.9 |
| Ia (TENMIK01)a | −5.8 | −6.2 | −39.4 | 13.1 | −37.4 |
| TENMIKa | −5.8 | −6.1 | −37.3 | 13.3 | −35.8 |
| II | −15.9 | −12.9 | −35.1 | 30.4 | −84.2 |
| IIa (AWEGEQ) a | −5.6 | −7.1 | −50.0 | 17.2 | −45.5 |
aCCDC reference code for the precursor compounds
Selected cation‐anion charge transfer process in I–II and its corresponding second order perturbation energy (E in kcal mol−1).
| Dimer | Compound I | Compound II | ||||
|---|---|---|---|---|---|---|
| Donor NBO | Aceptor NBO |
| Donor NBO | Aceptor NBO |
| |
| D1 | LP (4) Br | BD*(1) C7−H7 | 5.64 | LP (4) Br | BD*(1) C7−H7 | 4.15 |
| LP (4) Br | BD*(1) C11−H11 | 1.58 | LP (4) Br | BD*(1) C11−H11 | 3.92 | |
| LP (3) Br | BD*(1) C17−H17 | 2.71 | ||||
| D2 | LP (4) Br | BD*(1) C3−H3B | 3.34 | LP (4) Br | BD*(1) C8−H8 | 10.53 |
| LP (3) Br | BD*(1) C1−H1A | 1.31 | ||||
| D3 | LP (4) Br | BD*(1) C4−H4 | 6.19 | LP (4) Br | BD*(2) C4=C5 | 2.20 |
| LP (4) Br | BD*(1) C3−H3A | 0.57 | ||||
| D4 | LP (4) Br | BD*(1) C2−H2 | 1.14 | LP (4) Br | BD*(1) C4−H4 | 3.57 |
| LP (4) Br | BD*(1) C1−H1B | 0.43 | LP (2) Br | BD*(1) C5−H5 | 0.73 | |
| D5 | LP (4) Br | BD*(1) C19−H19B | 4.18 | LP (3) Br | BD*(1) C1−H1B | 1.22 |
| D6 | LP (3) Br | BD*(1) C26−H26 | 1.35 | |||
Figure 13Views of the Hirshfeld surface mapped with d in two different orientations for I and II with their precursor compounds (Ia for TENMIK‐A; TENMIK‐B and TENMIK01; IIa for AWEGEQ). The significant contacts are labelled. To refer Table 5 for the more details about the interactions.
Figure 142D Finger print (FP) plots for I–II along with their precursor compounds. The important contacts are labelled.
Figure 15Relative contributions of various intermolecular contacts in I and II along with their precursor compounds.