Literature DB >> 23795060

1-Allyl-2-amino-pyridin-1-ium bromide.

T Seethalakshmi1, P Venkatesan, M Nallu, Daniel E Lynch, S Thamotharan.   

Abstract

In the cation of the title salt, C8H11N2 (+)·Br(-), the dihedral angle between the planes of the pyridinium ring and the allyl group is 79.4 (3)°. In the crystal, N-H⋯Br and weak C-H⋯Br hydrogen bonds link the cations and anions, forming chains of alternating R 2 (1)(7) and R 4 (2)(8) rings, which run parallel to the c-axis direction. The crystal studied was an inversion twin with components in a 0.753 (12):0.247 (12) ratio.

Entities:  

Year:  2013        PMID: 23795060      PMCID: PMC3685041          DOI: 10.1107/S1600536813012452

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Seethalakshmi et al. (2006a ▶,b ▶,c ▶, 2007 ▶, 2013 ▶). For the biolgical activity of alkyl-pyridinium salts, see: Sundararaman et al. (2013 ▶); Ilangovan et al. (2012 ▶). For hydrogen-bond graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H11N2 +·Br M = 215.10 Orthorhombic, a = 7.8205 (2) Å b = 13.3560 (3) Å c = 8.5621 (2) Å V = 894.32 (4) Å3 Z = 4 Mo Kα radiation μ = 4.53 mm−1 T = 120 K 0.30 × 0.14 × 0.03 mm

Data collection

Bruker–Nonius 95mm CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.343, T max = 0.876 14540 measured reflections 2033 independent reflections 1960 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.053 S = 1.06 2033 reflections 110 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 945 Friedel pairs Flack parameter: 0.247 (12) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813012452/lh5611sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012452/lh5611Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012452/lh5611Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N2+·BrF(000) = 432
Mr = 215.10Dx = 1.598 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1211 reflections
a = 7.8205 (2) Åθ = 2.9–27.5°
b = 13.3560 (3) ŵ = 4.53 mm1
c = 8.5621 (2) ÅT = 120 K
V = 894.32 (4) Å3Plate, colourless
Z = 40.30 × 0.14 × 0.03 mm
Bruker–Nonius 95mm CCD camera on κ-goniostat diffractometer2033 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode1960 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.0°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)k = −17→17
Tmin = 0.343, Tmax = 0.876l = −10→11
14540 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.023w = 1/[σ2(Fo2) + (0.0198P)2 + 0.704P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.053(Δ/σ)max = 0.001
S = 1.06Δρmax = 0.43 e Å3
2033 reflectionsΔρmin = −0.35 e Å3
110 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraintsExtinction coefficient: 0.0051 (7)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 945 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.247 (12)
Experimental. The minimum and maximum absorption values stated above are those calculated in SHELXL97 from the given crystal dimensions. The ratio of minimum to maximum apparent transmission was determined experimentally as 0.611792.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.03564 (3)0.120651 (14)0.72785 (7)0.01951 (9)
C10.2522 (4)0.6591 (2)0.6626 (3)0.0171 (6)
C20.2481 (4)0.75344 (18)0.5884 (3)0.0223 (5)
H20.28260.75980.48250.027*
C30.1942 (4)0.8354 (2)0.6696 (4)0.0238 (6)
H30.19090.89890.61980.029*
C40.1434 (4)0.8267 (2)0.8268 (4)0.0227 (6)
H40.10710.88370.88410.027*
C50.1474 (4)0.7353 (2)0.8941 (3)0.0210 (5)
H50.11210.72850.99970.025*
C60.1943 (3)0.55284 (19)0.8940 (3)0.0195 (5)
H6A0.19700.56321.00850.023*
H6B0.29620.51310.86470.023*
C70.0363 (3)0.4961 (2)0.8511 (3)0.0221 (6)
H7−0.07140.52670.87040.026*
C80.0379 (4)0.4061 (2)0.7883 (4)0.0264 (6)
H8A0.14370.37370.76780.032*
H8B−0.06660.37360.76350.032*
N10.2010 (3)0.65157 (19)0.8142 (3)0.0174 (5)
N20.3083 (3)0.57779 (17)0.5869 (2)0.0208 (5)
H2A0.339 (5)0.524 (2)0.630 (4)0.049 (11)*
H2B0.341 (5)0.588 (3)0.494 (3)0.040 (10)*
U11U22U33U12U13U23
Br10.02238 (13)0.02017 (12)0.01599 (12)−0.00267 (8)−0.00157 (17)0.00066 (16)
C10.0158 (12)0.0185 (14)0.0168 (12)−0.0021 (11)−0.0001 (10)−0.0016 (10)
C20.0245 (13)0.0228 (14)0.0196 (13)−0.0015 (11)0.0013 (11)0.0045 (10)
C30.0259 (15)0.0163 (13)0.0293 (15)0.0019 (12)−0.0013 (11)0.0036 (10)
C40.0223 (14)0.0220 (14)0.0238 (15)0.0013 (11)0.0000 (11)−0.0053 (11)
C50.0225 (14)0.0230 (14)0.0176 (12)0.0010 (11)−0.0009 (11)−0.0037 (10)
C60.0255 (13)0.0198 (12)0.0131 (11)0.0014 (10)0.0020 (10)0.0024 (9)
C70.0196 (13)0.0238 (14)0.0228 (14)−0.0012 (10)0.0014 (10)0.0097 (11)
C80.0240 (14)0.0286 (14)0.0265 (13)−0.0040 (11)−0.0018 (10)0.0051 (12)
N10.0211 (12)0.0169 (11)0.0141 (11)−0.0002 (10)0.0004 (10)−0.0004 (9)
N20.0265 (12)0.0215 (12)0.0144 (11)0.0023 (9)0.0006 (9)0.0014 (9)
C1—N21.339 (4)C6—N11.486 (3)
C1—N11.361 (3)C6—C71.496 (4)
C1—C21.412 (4)C6—H6A0.9900
C2—C31.364 (4)C6—H6B0.9900
C2—H20.9500C7—C81.317 (4)
C3—C41.408 (4)C7—H70.9500
C3—H30.9500C8—H8A0.9500
C4—C51.350 (4)C8—H8B0.9500
C4—H40.9500N2—H2A0.844 (18)
C5—N11.376 (4)N2—H2B0.849 (19)
C5—H50.9500
N2—C1—N1119.9 (3)C7—C6—H6A109.3
N2—C1—C2120.9 (3)N1—C6—H6B109.3
N1—C1—C2119.2 (3)C7—C6—H6B109.3
C3—C2—C1119.6 (3)H6A—C6—H6B108.0
C3—C2—H2120.2C8—C7—C6123.7 (3)
C1—C2—H2120.2C8—C7—H7118.2
C2—C3—C4120.5 (3)C6—C7—H7118.2
C2—C3—H3119.7C7—C8—H8A120.0
C4—C3—H3119.7C7—C8—H8B120.0
C5—C4—C3118.4 (3)H8A—C8—H8B120.0
C5—C4—H4120.8C1—N1—C5120.2 (3)
C3—C4—H4120.8C1—N1—C6120.9 (3)
C4—C5—N1122.0 (3)C5—N1—C6118.8 (2)
C4—C5—H5119.0C1—N2—H2A125 (3)
N1—C5—H5119.0C1—N2—H2B115 (3)
N1—C6—C7111.5 (2)H2A—N2—H2B118 (4)
N1—C6—H6A109.3
N2—C1—C2—C3−178.4 (3)C2—C1—N1—C5−0.5 (4)
N1—C1—C2—C30.4 (4)N2—C1—N1—C6−4.5 (4)
C1—C2—C3—C40.2 (4)C2—C1—N1—C6176.6 (3)
C2—C3—C4—C5−0.8 (4)C4—C5—N1—C10.0 (4)
C3—C4—C5—N10.7 (4)C4—C5—N1—C6−177.2 (3)
N1—C6—C7—C8122.7 (3)C7—C6—N1—C1−79.8 (3)
N2—C1—N1—C5178.3 (3)C7—C6—N1—C597.4 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Br1i0.84 (2)2.61 (2)3.412 (2)160 (4)
N2—H2B···Br1ii0.85 (2)2.51 (2)3.357 (2)175 (3)
C6—H6A···Br1iii0.992.913.668 (3)134
C6—H6B···Br1i0.992.843.810 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯Br1i 0.84 (2)2.61 (2)3.412 (2)160 (4)
N2—H2B⋯Br1ii 0.85 (2)2.51 (2)3.357 (2)175 (3)
C6—H6A⋯Br1iii 0.992.913.668 (3)134
C6—H6B⋯Br1i 0.992.843.810 (3)167

Symmetry codes: (i) ; (ii) ; (iii) .

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