Literature DB >> 31003199

Slow and steady wins the race: physical limits on the rate of viral DNA packaging.

Paul J Jardine1.   

Abstract

During the assembly of dsDNA viruses such as the tailed bacteriophages and herpesviruses, the viral chromosome is compacted to near crystalline density inside a preformed head shell. DNA translocation is driven by powerful ring ATPase motors that couple ATP binding, hydrolysis, and release to force generation and movement. Studies of the motor of the bacteriophage phi29 have revealed a complex mechanochemistry behind this process that slows as the head fills. Recent studies of the physical behavior of packaging DNA suggest that surprisingly long-time scales of relaxation of DNA inside the head and jamming phenomena during packaging create the physical need for regulation of the rate of packaging. Studies of DNA packaging in viral systems have, therefore, revealed fundamental insight into the complex behavior of DNA and the need for biological systems to accommodate these physical constraints.
Copyright © 2019 Elsevier B.V. All rights reserved.

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Year:  2019        PMID: 31003199      PMCID: PMC6626563          DOI: 10.1016/j.coviro.2019.03.002

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  30 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

Review 3.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

4.  Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations.

Authors:  Derek N Fuller; Dorian M Raymer; John Peter Rickgauer; Rae M Robertson; Carlos E Catalano; Dwight L Anderson; Shelley Grimes; Douglas E Smith
Journal:  J Mol Biol       Date:  2007-09-11       Impact factor: 5.469

Review 5.  Physical chemistry of DNA viruses.

Authors:  Charles M Knobler; William M Gelbart
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

6.  Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.

Authors:  Fang Ding; Changrui Lu; Wei Zhao; Kanagalaghatta R Rajashankar; Dwight L Anderson; Paul J Jardine; Shelley Grimes; Ailong Ke
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-06       Impact factor: 11.205

Review 7.  The bacteriophage DNA packaging machine.

Authors:  Michael Feiss; Venigalla B Rao
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 3.650

8.  Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.

Authors:  Ravi K Lokareddy; Rajeshwer S Sankhala; Ankoor Roy; Pavel V Afonine; Tina Motwani; Carolyn M Teschke; Kristin N Parent; Gino Cingolani
Journal:  Nat Commun       Date:  2017-01-30       Impact factor: 14.919

9.  Structural and Molecular Basis for Coordination in a Viral DNA Packaging Motor.

Authors:  Huzhang Mao; Mitul Saha; Emilio Reyes-Aldrete; Michael B Sherman; Michael Woodson; Rockney Atz; Shelley Grimes; Paul J Jardine; Marc C Morais
Journal:  Cell Rep       Date:  2016-02-18       Impact factor: 9.423

10.  Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging.

Authors:  Nicholas Keller; Shelley Grimes; Paul J Jardine; Douglas E Smith
Journal:  Nat Phys       Date:  2016-05-02       Impact factor: 20.034

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  3 in total

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Authors:  Daniel Shoup; Andrew Roth; Rajan Thapa; Jason Puchalla; Hays S Rye
Journal:  Biophys J       Date:  2021-04-05       Impact factor: 3.699

2.  A viral genome packaging ring-ATPase is a flexibly coordinated pentamer.

Authors:  Li Dai; Digvijay Singh; Suoang Lu; Vishal I Kottadiel; Reza Vafabakhsh; Marthandan Mahalingam; Yann R Chemla; Taekjip Ha; Venigalla B Rao
Journal:  Nat Commun       Date:  2021-11-12       Impact factor: 17.694

Review 3.  Addressing Antiretroviral Drug Resistance with Host-Targeting Drugs-First Steps towards Developing a Host-Targeting HIV-1 Assembly Inhibitor.

Authors:  Jaisri R Lingappa; Vishwanath R Lingappa; Jonathan C Reed
Journal:  Viruses       Date:  2021-03-10       Impact factor: 5.048

  3 in total

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