Literature DB >> 30982672

Big science and big data in nephrology.

Julio Saez-Rodriguez1, Markus M Rinschen2, Jürgen Floege3, Rafael Kramann4.   

Abstract

There have been tremendous advances during the last decade in methods for large-scale, high-throughput data generation and in novel computational approaches to analyze these datasets. These advances have had a profound impact on biomedical research and clinical medicine. The field of genomics is rapidly developing toward single-cell analysis, and major advances in proteomics and metabolomics have been made in recent years. The developments on wearables and electronic health records are poised to change clinical trial design. This rise of 'big data' holds the promise to transform not only research progress, but also clinical decision making towards precision medicine. To have a true impact, it requires integrative and multi-disciplinary approaches that blend experimental, clinical and computational expertise across multiple institutions. Cancer research has been at the forefront of the progress in such large-scale initiatives, so-called 'big science,' with an emphasis on precision medicine, and various other areas are quickly catching up. Nephrology is arguably lagging behind, and hence these are exciting times to start (or redirect) a research career to leverage these developments in nephrology. In this review, we summarize advances in big data generation, computational analysis, and big science initiatives, with a special focus on applications to nephrology.
Copyright © 2019 International Society of Nephrology. All rights reserved.

Entities:  

Keywords:  chronic kidney disease; gene expression; proteomic analysis

Year:  2019        PMID: 30982672     DOI: 10.1016/j.kint.2018.11.048

Source DB:  PubMed          Journal:  Kidney Int        ISSN: 0085-2538            Impact factor:   10.612


  16 in total

Review 1.  Machine learning, the kidney, and genotype-phenotype analysis.

Authors:  Rachel S G Sealfon; Laura H Mariani; Matthias Kretzler; Olga G Troyanskaya
Journal:  Kidney Int       Date:  2020-04-01       Impact factor: 10.612

2.  Urinary expression of long non-coding RNA TUG1 in non-diabetic patients with glomerulonephritides.

Authors:  Fernando Javier Salazar-Torres; Miguel Medina-Perez; Zesergio Melo; Claudia Mendoza-Cerpa; Raquel Echavarria
Journal:  Biomed Rep       Date:  2020-11-20

3.  MAIT Cells as Drivers of Renal Fibrosis and CKD.

Authors:  Birgit Sawitzki
Journal:  J Am Soc Nephrol       Date:  2019-06-11       Impact factor: 10.121

Review 4.  The tissue proteome in the multi-omic landscape of kidney disease.

Authors:  Markus M Rinschen; Julio Saez-Rodriguez
Journal:  Nat Rev Nephrol       Date:  2020-10-07       Impact factor: 28.314

Review 5.  Advances in proteomic profiling of pediatric kidney diseases.

Authors:  Timothy D Cummins; Erik A Korte; Sagar Bhayana; Michael L Merchant; Michelle T Barati; William E Smoyer; Jon B Klein
Journal:  Pediatr Nephrol       Date:  2022-02-26       Impact factor: 3.651

Review 6.  Artificial Intelligence in Nephrology: How Can Artificial Intelligence Augment Nephrologists' Intelligence?

Authors:  Guotong Xie; Tiange Chen; Yingxue Li; Tingyu Chen; Xiang Li; Zhihong Liu
Journal:  Kidney Dis (Basel)       Date:  2019-12-03

Review 7.  Leveraging Data Science for a Personalized Haemodialysis.

Authors:  Miguel Hueso; Lluís de Haro; Jordi Calabia; Rafael Dal-Ré; Cristian Tebé; Karina Gibert; Josep M Cruzado; Alfredo Vellido
Journal:  Kidney Dis (Basel)       Date:  2020-05-25

Review 8.  Artificial intelligence and machine learning in nephropathology.

Authors:  Jan U Becker; David Mayerich; Meghana Padmanabhan; Jonathan Barratt; Angela Ernst; Peter Boor; Pietro A Cicalese; Chandra Mohan; Hien V Nguyen; Badrinath Roysam
Journal:  Kidney Int       Date:  2020-04-01       Impact factor: 10.612

9.  Deep-Learning-Driven Quantification of Interstitial Fibrosis in Digitized Kidney Biopsies.

Authors:  Yi Zheng; Clarissa A Cassol; Saemi Jung; Divya Veerapaneni; Vipul C Chitalia; Kevin Y M Ren; Shubha S Bellur; Peter Boor; Laura M Barisoni; Sushrut S Waikar; Margrit Betke; Vijaya B Kolachalama
Journal:  Am J Pathol       Date:  2021-05-23       Impact factor: 5.770

Review 10.  Diagnostic, Prognostic, and Therapeutic Value of Non-Coding RNA Expression Profiles in Renal Transplantation.

Authors:  Adriana Franco-Acevedo; Zesergio Melo; Raquel Echavarria
Journal:  Diagnostics (Basel)       Date:  2020-01-22
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