Literature DB >> 32475607

Artificial intelligence and machine learning in nephropathology.

Jan U Becker1, David Mayerich2, Meghana Padmanabhan2, Jonathan Barratt3, Angela Ernst4, Peter Boor5, Pietro A Cicalese6, Chandra Mohan6, Hien V Nguyen2, Badrinath Roysam2.   

Abstract

Artificial intelligence (AI) for the purpose of this review is an umbrella term for technologies emulating a nephropathologist's ability to extract information on diagnosis, prognosis, and therapy responsiveness from native or transplant kidney biopsies. Although AI can be used to analyze a wide variety of biopsy-related data, this review focuses on whole slide images traditionally used in nephropathology. AI applications in nephropathology have recently become available through several advancing technologies, including (i) widespread introduction of glass slide scanners, (ii) data servers in pathology departments worldwide, and (iii) through greatly improved computer hardware to enable AI training. In this review, we explain how AI can enhance the reproducibility of nephropathology results for certain parameters in the context of precision medicine using advanced architectures, such as convolutional neural networks, that are currently the state of the art in machine learning software for this task. Because AI applications in nephropathology are still in their infancy, we show the power and potential of AI applications mostly in the example of oncopathology. Moreover, we discuss the technological obstacles as well as the current stakeholder and regulatory concerns about developing AI applications in nephropathology from the perspective of nephropathologists and the wider nephrology community. We expect the gradual introduction of these technologies into routine diagnostics and research for selective tasks, suggesting that this technology will enhance the performance of nephropathologists rather than making them redundant.
Copyright © 2020 International Society of Nephrology. All rights reserved.

Entities:  

Keywords:  artificial intelligence; computer; convolutional neural network; image recognition; nephropathology

Mesh:

Year:  2020        PMID: 32475607      PMCID: PMC8906056          DOI: 10.1016/j.kint.2020.02.027

Source DB:  PubMed          Journal:  Kidney Int        ISSN: 0085-2538            Impact factor:   10.612


  82 in total

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Authors:  Bevra H Hahn; Maureen A McMahon; Alan Wilkinson; W Dean Wallace; David I Daikh; John D Fitzgerald; George A Karpouzas; Joan T Merrill; Daniel J Wallace; Jinoos Yazdany; Rosalind Ramsey-Goldman; Karandeep Singh; Mazdak Khalighi; Soo-In Choi; Maneesh Gogia; Suzanne Kafaja; Mohammad Kamgar; Christine Lau; William J Martin; Sefali Parikh; Justin Peng; Anjay Rastogi; Weiling Chen; Jennifer M Grossman
Journal:  Arthritis Care Res (Hoboken)       Date:  2012-06       Impact factor: 4.794

2.  Reproducibility of the Oxford classification of immunoglobulin A nephropathy, impact of biopsy scoring on treatment allocation and clinical relevance of disagreements: evidence from the VALidation of IGA study cohort.

Authors:  Shubha S Bellur; Ian S D Roberts; Stéphan Troyanov; Virginie Royal; Rosanna Coppo; H Terence Cook; Daniel Cattran; Yolanda Arce Terroba; Anna Maria Asunis; Ingeborg Bajema; Elisabetta Bertoni; Jan A Bruijn; Pablo Cannata-Ortiz; Donatella Casartelli; Anna Maria Di Palma; Franco Ferrario; Mirella Fortunato; Luciana Furci; Hariklia Gakiopoulou; Danica Galesic Ljubanovic; Konstantinos Giannakakis; Montserrat Gomà; Hermann-Josef Gröne; Eduardo Gutiérrez; S Asma Haider; Eva Honsova; Elli Ioachim; Henryk Karkoszka; David Kipgen; Jagoda Maldyk; Gianna Mazzucco; Diclehan Orhan; Yasemin Ozluk; Afroditi Pantzaki; Agnieszka Perkowska-Ptasinska; Zivili Riispere; Magnus P Soderberg; Eric Steenbergen; Antonella Stoppacciaro; Birgitta Sundelin Von Feilitzen; Regina Tardanico
Journal:  Nephrol Dial Transplant       Date:  2019-10-01       Impact factor: 5.992

3.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks.

Authors:  Shaoqing Ren; Kaiming He; Ross Girshick; Jian Sun
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-06-06       Impact factor: 6.226

4.  Deep Learning-Based Histopathologic Assessment of Kidney Tissue.

Authors:  Meyke Hermsen; Thomas de Bel; Marjolijn den Boer; Eric J Steenbergen; Jesper Kers; Sandrine Florquin; Joris J T H Roelofs; Mark D Stegall; Mariam P Alexander; Byron H Smith; Bart Smeets; Luuk B Hilbrands; Jeroen A W M van der Laak
Journal:  J Am Soc Nephrol       Date:  2019-09-05       Impact factor: 10.121

5.  A method to reduce variability in scoring antibody-mediated rejection in renal allografts: implications for clinical trials - a retrospective study.

Authors:  Byron Smith; Lynn D Cornell; Maxwell Smith; Cherise Cortese; Xochiquetzal Geiger; Mariam P Alexander; Margaret Ryan; Walter Park; Martha Catalina Morales Alvarez; Carrie Schinstock; Walter Kremers; Mark Stegall
Journal:  Transpl Int       Date:  2018-10-02       Impact factor: 3.782

6.  Evaluating a New International Risk-Prediction Tool in IgA Nephropathy.

Authors:  Sean J Barbour; Rosanna Coppo; Hong Zhang; Zhi-Hong Liu; Yusuke Suzuki; Keiichi Matsuzaki; Ritsuko Katafuchi; Lee Er; Gabriela Espino-Hernandez; S Joseph Kim; Heather N Reich; John Feehally; Daniel C Cattran
Journal:  JAMA Intern Med       Date:  2019-07-01       Impact factor: 21.873

7.  A Deep Learning Convolutional Neural Network Can Recognize Common Patterns of Injury in Gastric Pathology.

Authors:  David R Martin; Joshua A Hanson; Rama R Gullapalli; Fred A Schultz; Aisha Sethi; Douglas P Clark
Journal:  Arch Pathol Lab Med       Date:  2019-06-27       Impact factor: 5.534

8.  Improving precision of glomerular filtration rate estimating model by ensemble learning.

Authors:  Xun Liu; Ningshan Li; Linsheng Lv; Yongmei Fu; Cailian Cheng; Caixia Wang; Yuqiu Ye; Shaomin Li; Tanqi Lou
Journal:  J Transl Med       Date:  2017-11-09       Impact factor: 5.531

9.  Methods for Segmentation and Classification of Digital Microscopy Tissue Images.

Authors:  Quoc Dang Vu; Simon Graham; Tahsin Kurc; Minh Nguyen Nhat To; Muhammad Shaban; Talha Qaiser; Navid Alemi Koohbanani; Syed Ali Khurram; Jayashree Kalpathy-Cramer; Tianhao Zhao; Rajarsi Gupta; Jin Tae Kwak; Nasir Rajpoot; Joel Saltz; Keyvan Farahani
Journal:  Front Bioeng Biotechnol       Date:  2019-04-02

10.  The Banff 2017 Kidney Meeting Report: Revised diagnostic criteria for chronic active T cell-mediated rejection, antibody-mediated rejection, and prospects for integrative endpoints for next-generation clinical trials.

Authors:  M Haas; A Loupy; C Lefaucheur; C Roufosse; D Glotz; D Seron; B J Nankivell; P F Halloran; R B Colvin; Enver Akalin; N Alachkar; S Bagnasco; Y Bouatou; J U Becker; L D Cornell; J P Duong van Huyen; I W Gibson; Edward S Kraus; R B Mannon; M Naesens; V Nickeleit; P Nickerson; D L Segev; H K Singh; M Stegall; P Randhawa; L Racusen; K Solez; M Mengel
Journal:  Am J Transplant       Date:  2018-01-21       Impact factor: 8.086

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  19 in total

Review 1.  AI applications in renal pathology.

Authors:  Yuankai Huo; Ruining Deng; Quan Liu; Agnes B Fogo; Haichun Yang
Journal:  Kidney Int       Date:  2021-02-10       Impact factor: 10.612

2.  Automatic Evaluation of Histological Prognostic Factors Using Two Consecutive Convolutional Neural Networks on Kidney Samples.

Authors:  Elise Marechal; Adrien Jaugey; Georges Tarris; Michel Paindavoine; Jean Seibel; Laurent Martin; Mathilde Funes de la Vega; Thomas Crepin; Didier Ducloux; Gilbert Zanetta; Sophie Felix; Pierre Henri Bonnot; Florian Bardet; Luc Cormier; Jean-Michel Rebibou; Mathieu Legendre
Journal:  Clin J Am Soc Nephrol       Date:  2021-12-03       Impact factor: 8.237

3.  Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining.

Authors:  Tianyuan Yao; Yuzhe Lu; Jun Long; Aadarsh Jha; Zheyu Zhu; Zuhayr Asad; Haichun Yang; Agnes B Fogo; Yuankai Huo
Journal:  J Med Imaging (Bellingham)       Date:  2022-06-20

Review 4.  Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples.

Authors:  Alton B Farris; Juan Vizcarra; Mohamed Amgad; Lee A D Cooper; David Gutman; Julien Hogan
Journal:  Histopathology       Date:  2021-03-08       Impact factor: 5.087

Review 5.  Deep learning powers cancer diagnosis in digital pathology.

Authors:  Yunjie He; Hong Zhao; Stephen T C Wong
Journal:  Comput Med Imaging Graph       Date:  2020-12-11       Impact factor: 4.790

6.  Deep-Learning-Driven Quantification of Interstitial Fibrosis in Digitized Kidney Biopsies.

Authors:  Yi Zheng; Clarissa A Cassol; Saemi Jung; Divya Veerapaneni; Vipul C Chitalia; Kevin Y M Ren; Shubha S Bellur; Peter Boor; Laura M Barisoni; Sushrut S Waikar; Margrit Betke; Vijaya B Kolachalama
Journal:  Am J Pathol       Date:  2021-05-23       Impact factor: 5.770

Review 7.  New Aspects of Kidney Fibrosis-From Mechanisms of Injury to Modulation of Disease.

Authors:  Marcus J Moeller; Rafael Kramann; Twan Lammers; Bernd Hoppe; Eicke Latz; Isis Ludwig-Portugall; Peter Boor; Jürgen Floege; Christian Kurts; Ralf Weiskirchen; Tammo Ostendorf
Journal:  Front Med (Lausanne)       Date:  2022-01-12

Review 8.  Monitoring Immune Responses in IgA Nephropathy: Biomarkers to Guide Management.

Authors:  Haresh Selvaskandan; Sufang Shi; Sara Twaij; Chee Kay Cheung; Jonathan Barratt
Journal:  Front Immunol       Date:  2020-10-06       Impact factor: 7.561

9.  Identification of glomerulosclerosis using IBM Watson and shallow neural networks.

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Journal:  J Nephrol       Date:  2022-01-18       Impact factor: 4.393

10.  Augmenting the Transplant Team With Artificial Intelligence: Toward Meaningful AI Use in Solid Organ Transplant.

Authors:  Jeffrey Clement; Angela Q Maldonado
Journal:  Front Immunol       Date:  2021-06-11       Impact factor: 7.561

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