Literature DB >> 35220505

Advances in proteomic profiling of pediatric kidney diseases.

Timothy D Cummins1, Erik A Korte2, Sagar Bhayana3, Michael L Merchant4, Michelle T Barati4, William E Smoyer3, Jon B Klein4.   

Abstract

Chronic kidney disease (CKD) can progress to kidney failure and require dialysis or transplantation, while early diagnosis can alter the course of disease and lead to better outcomes in both pediatric and adult patients. Significant CKD comorbidities include the manifestation of cardiovascular disease, heart failure, coronary disease, and hypertension. The pathogenesis of chronic kidney diseases can present as subtle and especially difficult to distinguish between different glomerular pathologies. Early detection of adult and pediatric CKD and detailed mechanistic understanding of the kidney damage can be helpful in delaying or curtailing disease progression via precise intervention toward diagnosis and prognosis. Clinically, serum creatinine and albumin levels can be indicative of CKD, but often are a lagging indicator only significantly affected once kidney function has severely diminished. The evolution of proteomics and mass spectrometry technologies has begun to provide a powerful research tool in defining these mechanisms and identifying novel biomarkers of CKD. Many of the same challenges and advances in proteomics apply to adult and pediatric patient populations. Additionally, proteomic analysis of adult CKD patients can be transferred directly toward advancing our knowledge of pediatric CKD as well. In this review, we highlight applications of proteomics that have yielded such biomarkers as PLA2R, SEMA3B, and other markers of membranous nephropathy as well as KIM-1, MCP-1, and NGAL in lupus nephritis among other potential diagnostic and prognostic markers. The potential for improving the clinical toolkit toward better treatment of pediatric kidney diseases is significantly aided by current and future development of proteomic applications.
© 2022. The Author(s), under exclusive licence to International Pediatric Nephrology Association.

Entities:  

Keywords:  Biomarker; Chronic kidney disease; Mass spectrometry; Pediatric glomerular disease; Proteomics

Mesh:

Substances:

Year:  2022        PMID: 35220505      PMCID: PMC9398920          DOI: 10.1007/s00467-022-05497-2

Source DB:  PubMed          Journal:  Pediatr Nephrol        ISSN: 0931-041X            Impact factor:   3.651


  64 in total

1.  Thrombospondin type-1 domain-containing 7A in idiopathic membranous nephropathy.

Authors:  Nicola M Tomas; Laurence H Beck; Catherine Meyer-Schwesinger; Barbara Seitz-Polski; Hong Ma; Gunther Zahner; Guillaume Dolla; Elion Hoxha; Udo Helmchen; Anne-Sophie Dabert-Gay; Delphine Debayle; Michael Merchant; Jon Klein; David J Salant; Rolf A K Stahl; Gérard Lambeau
Journal:  N Engl J Med       Date:  2014-11-13       Impact factor: 91.245

2.  IgA nephropathy associated with Hodgkin's disease in children: a case report, literature review and urinary proteome analysis.

Authors:  Sookkasem Khositseth; Nonglak Kanitsap; Naree Warnnissorn; Visith Thongboonkerd
Journal:  Pediatr Nephrol       Date:  2006-12-02       Impact factor: 3.714

3.  Metabolomics-proteomics profiles delineate metabolic changes in kidney fibrosis disease.

Authors:  Hongxin Cao; Aihua Zhang; Hui Sun; Xiaohang Zhou; Yu Guan; Qi Liu; Ling Kong; Xijun Wang
Journal:  Proteomics       Date:  2015-11       Impact factor: 3.984

4.  M-type phospholipase A2 receptor as target antigen in idiopathic membranous nephropathy.

Authors:  Laurence H Beck; Ramon G B Bonegio; Gérard Lambeau; David M Beck; David W Powell; Timothy D Cummins; Jon B Klein; David J Salant
Journal:  N Engl J Med       Date:  2009-07-02       Impact factor: 91.245

5.  GFR Estimation Using β-Trace Protein and β2-Microglobulin in CKD.

Authors:  Lesley A Inker; Hocine Tighiouart; Josef Coresh; Meredith C Foster; Amanda H Anderson; Gerald J Beck; Gabriel Contreras; Tom Greene; Amy B Karger; John W Kusek; James Lash; Julia Lewis; Jeffrey R Schelling; Sankar D Navaneethan; James Sondheimer; Tariq Shafi; Andrew S Levey
Journal:  Am J Kidney Dis       Date:  2015-09-09       Impact factor: 8.860

6.  Clinical characteristics of children with membranous lupus nephritis: the Childhood Arthritis and Rheumatology Research Alliance Legacy Registry.

Authors:  A Boneparth; S E Wenderfer; L Nandini Moorthy; S M Radhakrishna; A C P Sagcal-Gironella; E von Scheven
Journal:  Lupus       Date:  2016-08-20       Impact factor: 2.911

7.  Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data.

Authors:  Sumanta Basu; William Duren; Charles R Evans; Charles F Burant; George Michailidis; Alla Karnovsky
Journal:  Bioinformatics       Date:  2017-05-15       Impact factor: 6.937

8.  MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.

Authors:  Zhiqiang Pang; Jasmine Chong; Guangyan Zhou; David Anderson de Lima Morais; Le Chang; Michel Barrette; Carol Gauthier; Pierre-Étienne Jacques; Shuzhao Li; Jianguo Xia
Journal:  Nucleic Acids Res       Date:  2021-05-21       Impact factor: 16.971

9.  Integrated Proteomic and Metabolomic prediction of Term Preeclampsia.

Authors:  Ray Bahado-Singh; Liona C Poon; Ali Yilmaz; Argyro Syngelaki; Onur Turkoglu; Praveen Kumar; Joseph Kirma; Matthew Allos; Veronica Accurti; Jiansheng Li; Peng Zhao; Stewart F Graham; David R Cool; Kypros Nicolaides
Journal:  Sci Rep       Date:  2017-11-23       Impact factor: 4.379

10.  Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.

Authors:  Farhana R Pinu; David J Beale; Amy M Paten; Konstantinos Kouremenos; Sanjay Swarup; Horst J Schirra; David Wishart
Journal:  Metabolites       Date:  2019-04-18
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  1 in total

1.  Biomarkers in Pediatric Nephrology-From Bedside to Bench and Back Again.

Authors:  Kinga Musiał
Journal:  J Clin Med       Date:  2022-10-07       Impact factor: 4.964

  1 in total

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