Literature DB >> 30979435

Identification of genetic heterogeneity of Alzheimer's disease across age.

Min-Tzu Lo1, Karolina Kauppi2, Chun-Chieh Fan3, Nilotpal Sanyal4, Emilie T Reas4, V S Sundar4, Wen-Chung Lee5, Rahul S Desikan6, Linda K McEvoy4, Chi-Hua Chen7.   

Abstract

The risk of APOE for Alzheimer's disease (AD) is modified by age. Beyond APOE, the polygenic architecture may also be heterogeneous across age. We aim to investigate age-related genetic heterogeneity of AD and identify genomic loci with differential effects across age. Stratified gene-based genome-wide association studies and polygenic variation analyses were performed in the younger (60-79 years, N = 14,895) and older (≥80 years, N = 6559) age-at-onset groups using Alzheimer's Disease Genetics Consortium data. We showed a moderate genetic correlation (rg = 0.64) between the two age groups, supporting genetic heterogeneity. Heritability explained by variants on chromosome 19 (harboring APOE) was significantly larger in younger than in older onset group (p < 0.05). APOE region, BIN1, OR2S2, MS4A4E, and PICALM were identified at the gene-based genome-wide significance (p < 2.73 × 10-6) with larger effects at younger age (except MS4A4E). For the novel gene OR2S2, we further performed leave-one-out analyses, which showed consistent effects across subsamples. Our results suggest using genetically more homogeneous individuals may help detect additional susceptible loci. Published by Elsevier Inc.

Entities:  

Keywords:  Alzheimer's disease; Gene-based analysis; Genetic correlation; Genetic heterogeneity; Stratified GWAS

Year:  2019        PMID: 30979435      PMCID: PMC6783343          DOI: 10.1016/j.neurobiolaging.2019.02.022

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  51 in total

1.  GCTA: a tool for genome-wide complex trait analysis.

Authors:  Jian Yang; S Hong Lee; Michael E Goddard; Peter M Visscher
Journal:  Am J Hum Genet       Date:  2010-12-17       Impact factor: 11.025

2.  APOE E4 status predicts age-related cognitive decline in the ninth decade: longitudinal follow-up of the Lothian Birth Cohort 1921.

Authors:  O J G Schiepers; S E Harris; A J Gow; A Pattie; C E Brett; J M Starr; I J Deary
Journal:  Mol Psychiatry       Date:  2011-01-25       Impact factor: 15.992

3.  Estimating missing heritability for disease from genome-wide association studies.

Authors:  Sang Hong Lee; Naomi R Wray; Michael E Goddard; Peter M Visscher
Journal:  Am J Hum Genet       Date:  2011-03-03       Impact factor: 11.025

4.  Age at onset in two common neurodegenerative diseases is genetically controlled.

Authors:  Yi-Ju Li; William K Scott; Dale J Hedges; Fengyu Zhang; P Craig Gaskell; Martha A Nance; Ray L Watts; Jean P Hubble; William C Koller; Rajesh Pahwa; Matthew B Stern; Bradley C Hiner; Joseph Jankovic; Fred A Allen; Christopher G Goetz; Frank Mastaglia; Jeffrey M Stajich; Rachel A Gibson; Lefkos T Middleton; Ann M Saunders; Burton L Scott; Gary W Small; Kristin K Nicodemus; Allison D Reed; Donald E Schmechel; Kathleen A Welsh-Bohmer; P Michael Conneally; Allen D Roses; John R Gilbert; Jeffery M Vance; Jonathan L Haines; Margaret A Pericak-Vance
Journal:  Am J Hum Genet       Date:  2002-03-01       Impact factor: 11.025

5.  Apolipoprotein E alleles, dyslipidemia, and coronary heart disease. The Framingham Offspring Study.

Authors:  P W Wilson; R H Myers; M G Larson; J M Ordovas; P A Wolf; E J Schaefer
Journal:  JAMA       Date:  1994-12-07       Impact factor: 56.272

6.  Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.

Authors:  Adam C Naj; Gyungah Jun; Gary W Beecham; Li-San Wang; Badri Narayan Vardarajan; Jacqueline Buros; Paul J Gallins; Joseph D Buxbaum; Gail P Jarvik; Paul K Crane; Eric B Larson; Thomas D Bird; Bradley F Boeve; Neill R Graff-Radford; Philip L De Jager; Denis Evans; Julie A Schneider; Minerva M Carrasquillo; Nilufer Ertekin-Taner; Steven G Younkin; Carlos Cruchaga; John S K Kauwe; Petra Nowotny; Patricia Kramer; John Hardy; Matthew J Huentelman; Amanda J Myers; Michael M Barmada; F Yesim Demirci; Clinton T Baldwin; Robert C Green; Ekaterina Rogaeva; Peter St George-Hyslop; Steven E Arnold; Robert Barber; Thomas Beach; Eileen H Bigio; James D Bowen; Adam Boxer; James R Burke; Nigel J Cairns; Chris S Carlson; Regina M Carney; Steven L Carroll; Helena C Chui; David G Clark; Jason Corneveaux; Carl W Cotman; Jeffrey L Cummings; Charles DeCarli; Steven T DeKosky; Ramon Diaz-Arrastia; Malcolm Dick; Dennis W Dickson; William G Ellis; Kelley M Faber; Kenneth B Fallon; Martin R Farlow; Steven Ferris; Matthew P Frosch; Douglas R Galasko; Mary Ganguli; Marla Gearing; Daniel H Geschwind; Bernardino Ghetti; John R Gilbert; Sid Gilman; Bruno Giordani; Jonathan D Glass; John H Growdon; Ronald L Hamilton; Lindy E Harrell; Elizabeth Head; Lawrence S Honig; Christine M Hulette; Bradley T Hyman; Gregory A Jicha; Lee-Way Jin; Nancy Johnson; Jason Karlawish; Anna Karydas; Jeffrey A Kaye; Ronald Kim; Edward H Koo; Neil W Kowall; James J Lah; Allan I Levey; Andrew P Lieberman; Oscar L Lopez; Wendy J Mack; Daniel C Marson; Frank Martiniuk; Deborah C Mash; Eliezer Masliah; Wayne C McCormick; Susan M McCurry; Andrew N McDavid; Ann C McKee; Marsel Mesulam; Bruce L Miller; Carol A Miller; Joshua W Miller; Joseph E Parisi; Daniel P Perl; Elaine Peskind; Ronald C Petersen; Wayne W Poon; Joseph F Quinn; Ruchita A Rajbhandary; Murray Raskind; Barry Reisberg; John M Ringman; Erik D Roberson; Roger N Rosenberg; Mary Sano; Lon S Schneider; William Seeley; Michael L Shelanski; Michael A Slifer; Charles D Smith; Joshua A Sonnen; Salvatore Spina; Robert A Stern; Rudolph E Tanzi; John Q Trojanowski; Juan C Troncoso; Vivianna M Van Deerlin; Harry V Vinters; Jean Paul Vonsattel; Sandra Weintraub; Kathleen A Welsh-Bohmer; Jennifer Williamson; Randall L Woltjer; Laura B Cantwell; Beth A Dombroski; Duane Beekly; Kathryn L Lunetta; Eden R Martin; M Ilyas Kamboh; Andrew J Saykin; Eric M Reiman; David A Bennett; John C Morris; Thomas J Montine; Alison M Goate; Deborah Blacker; Debby W Tsuang; Hakon Hakonarson; Walter A Kukull; Tatiana M Foroud; Jonathan L Haines; Richard Mayeux; Margaret A Pericak-Vance; Lindsay A Farrer; Gerard D Schellenberg
Journal:  Nat Genet       Date:  2011-04-03       Impact factor: 38.330

7.  Second-generation PLINK: rising to the challenge of larger and richer datasets.

Authors:  Christopher C Chang; Carson C Chow; Laurent Cam Tellier; Shashaank Vattikuti; Shaun M Purcell; James J Lee
Journal:  Gigascience       Date:  2015-02-25       Impact factor: 6.524

8.  Assessment of the genetic variance of late-onset Alzheimer's disease.

Authors:  Perry G Ridge; Kaitlyn B Hoyt; Kevin Boehme; Shubhabrata Mukherjee; Paul K Crane; Jonathan L Haines; Richard Mayeux; Lindsay A Farrer; Margaret A Pericak-Vance; Gerard D Schellenberg; John S K Kauwe
Journal:  Neurobiol Aging       Date:  2016-03-03       Impact factor: 4.673

9.  Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis.

Authors:  S Hong Lee; Denise Harold; Dale R Nyholt; Michael E Goddard; Krina T Zondervan; Julie Williams; Grant W Montgomery; Naomi R Wray; Peter M Visscher
Journal:  Hum Mol Genet       Date:  2012-11-28       Impact factor: 6.150

Review 10.  The genetic landscape of Alzheimer disease: clinical implications and perspectives.

Authors:  Caroline Van Cauwenberghe; Christine Van Broeckhoven; Kristel Sleegers
Journal:  Genet Med       Date:  2015-08-27       Impact factor: 8.822

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  14 in total

1.  The Big Picture of Neurodegeneration: A Meta Study to Extract the Essential Evidence on Neurodegenerative Diseases in a Network-Based Approach.

Authors:  Nicolas Ruffini; Susanne Klingenberg; Raoul Heese; Susann Schweiger; Susanne Gerber
Journal:  Front Aging Neurosci       Date:  2022-06-27       Impact factor: 5.702

2.  Association of Klotho-VS Heterozygosity With Risk of Alzheimer Disease in Individuals Who Carry APOE4.

Authors:  Michael E Belloy; Valerio Napolioni; Summer S Han; Yann Le Guen; Michael D Greicius
Journal:  JAMA Neurol       Date:  2020-07-01       Impact factor: 18.302

3.  PICALM mRNA Expression in the Blood of Patients with Neurodegenerative Diseases and Geriatric Depression.

Authors:  Hiroshi Kumon; Yuta Yoshino; Yu Funahashi; Hiroaki Mori; Mariko Ueno; Yuki Ozaki; Kiyohiro Yamazaki; Shinichiro Ochi; Takaaki Mori; Jun-Ichi Iga; Masahiro Nagai; Masahiro Nomoto; Shu-Ichi Ueno
Journal:  J Alzheimers Dis       Date:  2021       Impact factor: 4.472

4.  Module Analysis Using Single-Patient Differential Expression Signatures Improves the Power of Association Studies for Alzheimer's Disease.

Authors:  Jialan Huang; Dong Lu; Guofeng Meng
Journal:  Front Genet       Date:  2020-11-20       Impact factor: 4.599

5.  Common Factors in Neurodegeneration: A Meta-Study Revealing Shared Patterns on a Multi-Omics Scale.

Authors:  Nicolas Ruffini; Susanne Klingenberg; Susann Schweiger; Susanne Gerber
Journal:  Cells       Date:  2020-12-08       Impact factor: 6.600

6.  Genetic effects on longitudinal cognitive decline during the early stages of Alzheimer's disease.

Authors:  Atul Kumar; Maryam Shoai; Sebastian Palmqvist; Erik Stomrud; John Hardy; Niklas Mattsson-Carlgren; Oskar Hansson
Journal:  Sci Rep       Date:  2021-10-06       Impact factor: 4.379

Review 7.  Polygenic Risk Scores in Alzheimer's Disease: Current Applications and Future Directions.

Authors:  Emily Baker; Valentina Escott-Price
Journal:  Front Digit Health       Date:  2020-08-11

8.  Shared genetic influences on resting-state functional networks of the brain.

Authors:  João P O F T Guimarães; E Sprooten; C F Beckmann; B Franke; J Bralten
Journal:  Hum Brain Mapp       Date:  2022-01-25       Impact factor: 5.399

9.  Age-dependent effect of APOE and polygenic component on Alzheimer's disease.

Authors:  Eftychia Bellou; Emily Baker; Ganna Leonenko; Matthew Bracher-Smith; Paula Daunt; Georgina Menzies; Julie Williams; Valentina Escott-Price
Journal:  Neurobiol Aging       Date:  2020-04-30       Impact factor: 4.673

10.  Risk prediction of late-onset Alzheimer's disease implies an oligogenic architecture.

Authors:  Qian Zhang; Julia Sidorenko; Baptiste Couvy-Duchesne; Riccardo E Marioni; Margaret J Wright; Alison M Goate; Edoardo Marcora; Kuan-Lin Huang; Tenielle Porter; Simon M Laws; Perminder S Sachdev; Karen A Mather; Nicola J Armstrong; Anbupalam Thalamuthu; Henry Brodaty; Loic Yengo; Jian Yang; Naomi R Wray; Allan F McRae; Peter M Visscher
Journal:  Nat Commun       Date:  2020-09-23       Impact factor: 14.919

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