| Literature DB >> 30975133 |
Fang Shen1, Yan Wang1, Hualei Sun1, Dongdong Zhang1, Fei Yu1, Songcheng Yu1, Han Han1, Jun Wang1, Yue Ba2, Chongjian Wang3, Wenjie Li1, Xing Li4.
Abstract
BACKGROUND: Evidence shows that low serum vitamin D concentrations account for an increased risk of obesity by inducing vitamin D receptor (VDR) hypofunction. Although the correlation between single nucleotide polymorphisms (SNPs) of VDR gene and obesity-related anthropometric measures (such as body mass index [BMI] and waist circumference[WC]) has already been tested, there are only few studies on the association between direct measures of body fat percentage (BFP) and triceps skinfold thickness and the SNPs of VDR. The aim of the present study was to evaluate the effect of VDR gene polymorphism on multiple obesity indexes in Han Chinese, including BMI, WC, BFP and triceps skinfold thickness.Entities:
Keywords: Adiposity; Body fat percentage; Interaction; Triceps skinfold thickness; VDR polymorphisms
Mesh:
Substances:
Year: 2019 PMID: 30975133 PMCID: PMC6460735 DOI: 10.1186/s12944-019-1027-2
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Basic characteristics of the study participants
| Parameter | Normal | Overweight/obesity | χ2/Z/t |
|
|---|---|---|---|---|
| 253 | 264 | |||
| Gender | 0.855 | 0.353 | ||
| Male | 121(47.8%) | 137(51.9%) | ||
| Female | 132(52.2%) | 127(48.1%) | ||
| Age | 9.819 | 0.002 | ||
| ≤45 | 172(68.0%) | 144(54.5%) | ||
| > 45 | 81(32.0%) | 120(45.5%) | ||
| BMI (kg/m2) | 21.55(19.81,22.80) | 26.51(25.10,28.22) | −19.67 | < 0.001 |
| WC (cm) | 75.71 ± 6.91 | 90.20 ± 8.12 | −21.821 | < 0.001 |
| WHR | 0.83 ± 0.06 | 0.91 ± 0.06 | −14.53 | < 0.001 |
| WHtR | 0.47 ± 0.05 | 0.56 ± 0.05 | −22.52 | < 0.001 |
| Triceps skin fold thickness (mm) | 15.48 ± 7.75 | 21.57 ± 8.29 | −8.584 | < 0.001 |
| Body fat percentage (%) | 19.05 ± 6.45 | 26.09 ± 6.49 | −12.174 | < 0.001 |
| HDL-C (mmol/L) | 1.42 ± 0.29 | 1.31 ± 08.27 | 3.656 | < 0.001 |
| LDL-C (mmol/L) | 2.16 ± 0.73 | 2.39 ± 0.71 | −3.500 | 0.001 |
| TC (mmol/L) | 4.04 ± 0.95 | 4.49 ± 1.04 | −5.170 | < 0.001 |
| TG (mmol/L) | 0.78(0.58,1.19) | 1.33(0.84,2.14) | −8.127 | < 0.001 |
Data are given as the mean ± SD, as n (%) or median (quartile range). BMI, body mass index; WC, waist circumference; WHR, waist-hip-ratio; WHtR, waist-height-ratio; HDL-C, high-density lipoprotein cholesterol; LDL-C, low-density lipoprotein cholesterol; TC, total cholesterol; TG, triglyceride
Fig. 1Forest plot of association between VDR polymorphisms and overweight/obesity and abdominal obesity. Logistic regression analyses were adjusted for age, gender, alcohol, high-fat diet, vegetable consumption, physical activity and the family history of obesity.
Selected tagging VDR SNPs significantly associated with body fat percentage and triceps skin fold thickness
| Body fat percentage (%) | Triceps skinfold thickness (mm) | |||
|---|---|---|---|---|
| SNPs | β ± SE |
| β ± SE |
|
| FokI | 0.069 ± 0.031 | 0.007 | 0.051 ± 0.030 | 0.053 |
| rs2189480 | 0.041 ± 0.029 | 0.148 | 0.049 ± 0.029 | 0.065 |
| rs2239179 | −0.030 ± 0.052 | 0.560 | 0.074 ± 0.028 | 0.001 |
| ApaI | 0.087 ± 0.039 | 0.022 | 0.122 ± 0.034 | < 0.001 |
Results are presented as β ± SE, β coefficients represent the mean difference in body fat percentage and triceps skinfold thickness for each additional rare allele of the corresponding SNP. Linear regression analyses were adjusted for age, gender, alcohol, high-fat diet, vegetable consumption, physical activity and the family history of obesity
GMDR models of gene-gene interactions on body fat percentage and triceps skin fold thickness
| Models | TBA1 | TBA2 | CVC |
|
|---|---|---|---|---|
| Gene-gene interaction for body fat percentagea | ||||
| ApaI | 0.569 | 0.511 | 6/10 | 0.172 |
| FokI, ApaI | 0.602 | 0.524 | 6/10 | 0.055 |
| FokI, ApaI, rs2239179 | 0.632 | 0.575 | 10/10 | 0.010 |
| FokI, ApaI, rs2239179, rs2189480 | 0.657 | 0.553 | 10/10 | 0.055 |
| Gene-gene interaction for triceps skin fold thicknessa | ||||
| ApaI | 0.593 | 0.595 | 10/10 | 0.001 |
| FokI, ApaI | 0.607 | 0.525 | 5/10 | 0.055 |
| FokI, ApaI, rs2189480 | 0.643 | 0.578 | 6/10 | 0.001 |
| FokI, ApaI rs2239179, rs2189480 | 0.655 | 0.541 | 10/10 | 0.001 |
GMDR Generalized multifactor dimensionality reduction, TBA1 Training balanced accuracy, TBA2 Testing balanced accuracy, CVC Cross-validation consistency. P = P value from sign test. a Adjusted for age, sex, alcohol, high-fat diet and the family history of obesity
Association of VDR polymorphisms with metabolic parameters
| SNP | TG | TC | HDL-C | LDL-C |
|---|---|---|---|---|
| FokI | ||||
| TT | 1.385 ± 1.091 | 4.218 ± 0.983 | 1.348 ± 1.091 | 2.199 ± 0.695 |
| CT | 1.400 ± 1.310 | 4.293 ± 1.049 | 1.357 ± 0.283 | 2.312 ± 0.732 |
| CC | 1.445 ± 1.379 | 4.272 ± 1.012 | 1.382 ± 0.295 | 2.277 ± 0.751 |
| rs2189480 | ||||
| CC | 1.034 ± 1.075 | 4.290 ± 1.027 | 1.364 ± 0.296 | 2.378 ± 0.731 |
| CA | 1.425 ± 1.411 | 4.254 ± 1.027 | 1.360 ± 0.297 | 2.218 ± 0.665 |
| AA | 1.425 ± 1.220 | 4.282 ± 1.024 | 1.363 ± 0.272 | 2.306 ± 0.782 |
| rs2239179 | ||||
| AA | 1.357 ± 1.138 | 4.241 ± 1.019 | 1.353 ± 0.277 | 2.279 ± 0.734 |
| AG | 1.552 ± 1.551 | 4.361 ± 1.034 | 1.377 ± 0.292 | 2.290 ± 0.725 |
| GG | 1.015 ± 0.608 | 4.005 ± 0.976 | 1.399 ± 0.353 | 2.204 ± 0.733 |
| ApaI | ||||
| GG | 1.426 ± 1.414 | 4.195 ± 0.998 | 1.363 ± 0.277 | 2.199 ± 0.670 |
| GT | 1.389 ± 0.992 | 4.437 ± 1.076a | 1.363 ± 0.309 | 2.432 ± 0.822* |
| TT | 1.358 ± 1.550 | 3.989 ± 0.783 | 1.347 ± 0.220 | 2.088 ± 0.461 |
Data are represented the mean ± SD. aThe second genotype is significantly different from the first genotype