| Literature DB >> 33469344 |
Di Wang1,2, Kunkai Su3, Zhongxiang Ding4, Zhiqun Zhang2, Chunlin Wang1.
Abstract
PURPOSE: To investigate the association between vitamin D receptor (VDR) gene polymorphisms and vitamin D deficiency, overweightness/obesity, and metabolic syndrome (MetS) in a cohort of Han children residing in Hangzhou, China. PATIENTS AND METHODS: This study assessed 106 overweight/obese and 86 healthy (control) children. Five single-nucleotide polymorphisms (SNPs) in the VDR gene, namely, TaqI (rs731236 T > C), ApaI (rs7975232 C > A), BsmI (rs1544410 G > A), FokI (rs2228570 G >A), and Cdx2 (rs11568820 G > A), were genotyped by sequencing the total polymerase chain reaction products. The distributions of different genotypes and alleles were compared among different groups.Entities:
Keywords: 25-hydroxyvitamin D; adiposity; allele frequencies; genotype; glucose intolerance
Year: 2021 PMID: 33469344 PMCID: PMC7812523 DOI: 10.2147/IJGM.S287205
Source DB: PubMed Journal: Int J Gen Med ISSN: 1178-7074
The Clinical and Biochemical Profiles of Subjects
| Overweightness/Obesity | Controls | ||
|---|---|---|---|
| N (male/female) | 106 (70/36) | 86 (60/26) | 0.583a |
| Age (years) | 10.83 ± 2.31 | 10.15 ± 2.53 | 0.050 |
| BMI z-score | 2.41 (1.78, 3.15) | −0.47 (−0.79, −0.19) | <0.001b |
| WHt | 0.58 (0.54, 0.61) | 0.42 (0.40, 0.44) | <0.001b |
| SBP (mmHg) | 117.56 ± 9.77 | 106.30 ± 8.03 | <0.001 |
| DBP (mmHg) | 69.22 ± 8.75 | 65.70 ± 7.47 | 0.004 |
| FBG (mmol/L) | 5.30 ± 0.74 | 5.17 ± 0.30 | 0.100 |
| TG (mmol/L) | 1.26 ± 0.67 | 0.68 ± 0.26 | <0.001 |
| TC (mmol/L) | 4.11 ± 0.62 | 3.79 ± 0.56 | <0.001 |
| LDL-C (mmol/L) | 2.33 ± 0.54 | 1.76 ± 0.41 | <0.001 |
| HDL-C (mmol/L) | 1.27 ± 0.27 | 1.45 ± 0.24 | <0.001 |
| 25(OH)D (ng/mL) | 18.44 ± 6.50 | 21.83 ± 7.32 | 0.001 |
| N (Vitamin D deficiency) | 68 | 41 | 0.022a |
Notes: The values are presented as mean ± SD or median (interquartile range). aP values were calculated using the Chi-square (X) test. bP values were calculated using the Mann–Whitney U-test.
Abbreviations: BMI, body mass index; WHtR, waist-to-height ratio; SBP, systolic blood pressure; DBP, diastolic blood pressure; FBG, fasting blood glucose; TG, triglycerides; TC, total cholesterol; LDL-C, low-density lipoprotein cholesterol; HDL-C, high-density lipoprotein cholesterol; 25(OH)D, 25-hydroxyvitamin D; SD, standard deviation.
Genotypes and Allele Frequencies of the Studied SNPs
| SNPs | Alleles (A/a) | SN Location | Chr 12 Position | Patients (n) | Genotype Frequencies | Allelic Frequencies | |||
|---|---|---|---|---|---|---|---|---|---|
| (GRCh38.p12) | AA | Aa | aa | A | a | ||||
| rs731236 (TaqI) | T/C | exon | 47,844,974 | 191 | 166 (86.5) | 23 (12.0) | 2 (1.0) | 0.93 | 0.07 |
| rs7975232 (ApaI) | C/A | intron | 47,845,054 | 190 | 94 (49.0) | 80 (41.7) | 16 (8.3) | 0.71 | 0.29 |
| rs1544410 (BsmI) | G/A | intron | 47,846,052 | 190 | 160 (83.3) | 27 (14.1) | 3 (1.6) | 0.91 | 0.09 |
| rs2228570 (FokI) | G/A | exon | 47,879,112 | 180 | 51 (26.6) | 91 (47.4) | 38 (19.8) | 0.54 | 0.46 |
| rs11568820 (Cdx2) | G/A | promoter | 47,908,762 | 191 | 61 (31.8) | 88 (45.8) | 42 (21.9) | 0.55 | 0.45 |
Note: “A” represents the major allele, while “a” represents the minor allele.
Abbreviations: SNP, single-nucleotide polymorphism; VDR, vitamin D receptor.
Distribution of SNP Genotypes and Allele Frequencies Between Overweight/Obese Children and Healthy Controls
| SNPs | Genotype/Allele | Overweightness/Obesity | Controls | OR | 95% CI | ||
|---|---|---|---|---|---|---|---|
| TaqI | TT | 92 (86.8%) | 74 (87.1%) | 0.547 | 1 | ||
| TC | 12 (11.3%) | 11 (12.9%) | 0.88 | 0.37–2.10 | 0.769 | ||
| CC | 2 (1.9%) | 0 | / | / | / | ||
| T | 196 (92.5%) | 159 (93.5%) | 1 | ||||
| C | 16 (7.5%) | 11 (6.5%) | 1.18 | 0.53–2.62 | 0.683 | ||
| ApaI | CC | 50 (47.6%) | 44 (51.8%) | 0.984 | 1 | ||
| CA | 41 (39.0%) | 39 (45.9%) | 0.93 | 0.51–0.68 | 0.798 | ||
| AA | 14 (13.3%) | 2 (2.4%) | 6.16 | 1.33–28.62 | 0.010 | ||
| C | 141 (67.1%) | 127 (74.7%) | 1 | ||||
| A | 69 (32.9%) | 43 (25.3%) | 1.45 | 0.92–2.27 | 0.108 | ||
| BsmI | GG | 92 (86.8%) | 68 (81.0%) | 0.603 | 1 | ||
| GA | 11 (10.4%) | 16 (19.0%) | 0.51 | 0.22–1.16 | 0.105 | ||
| AA | 3 (2.8%) | 0 | / | / | / | ||
| G | 195 (92.0%) | 152 (90.5%) | 1 | ||||
| A | 17 (8.0%) | 16 (9.5%) | 0.83 | 0.41–1.69 | 0.605 | ||
| FokI | GG | 28 (26.7%) | 23 (30.7%) | 0.976 | 1 | ||
| GA | 52 (49.5%) | 39 (52.0%) | 1.10 | 0.55–2.18 | 0.796 | ||
| AA | 25 (23.8%) | 13 (17.3%) | 1.58 | 0.66–3.76 | 0.301 | ||
| G | 108 (51.4%) | 85 (56.7%) | 1 | ||||
| A | 102 (48.6%) | 65 (43.3%) | 1.24 | 0.81–1.88 | 0.326 | ||
| Cdx2 | GG | 33 (31.1%) | 28 (32.9%) | 0.631 | 1 | ||
| GA | 49 (46.2%) | 39 (45.9%) | 1.07 | 0.55–2.06 | 0.848 | ||
| AA | 24 (22.6%) | 18 (21.2%) | 1.13 | 0.51–2.50 | 0.760 | ||
| G | 115 (54.2%) | 95 (55.9%) | 1 | ||||
| A | 97 (45.8%) | 75 (44.1%) | 1.07 | 0.71–1.60 | 0.749 |
Notes: aP-value for HWE test in both groups. bP-value for OR.
Abbreviations: HWE, Hardy-Weinberg equilibrium; OR, odds ratio; SNP, single-nucleotide polymorphism; CI, confidence interval.
SNP Genotype Distributions and Risk Assessments for Metabolic Syndrome and Its Components with Vitamin D Deficiency, Using Genetic Models
| SNPs/Models | Genotypes | Metabolic Syndrome | Abdominal Obesity | Increased Plasma Glucose | High Blood Pressure | Low HDL-C | Elevated TG | Vitamin D Deficiency | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR | OR | OR | OR | OR | OR | OR | |||||||||
| ApaI | |||||||||||||||
| Dominant | CC | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| CA+AA | 0.73 | 0.540 | 1.01 | 0.975 | 0.57 | 0.161 | 2.83 | 0.137 | 0.85 | 0.745 | 0.74 | 0.481 | 1.21 | 0.519 | |
| Recessive | CC+CA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA | 1.85 | 0.406 | 4.01 | 0.039 | 3.88 | 0.020 | 1.18 | 0.878 | 1.46 | 0.641 | 1.59 | 0.496 | 2.84 | 0.120 | |
| FokI | |||||||||||||||
| Dominant | GG | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA+GA | 0.91 | 0.865 | 1.45 | 0.278 | 1.06 | 0.901 | 0.29 | 0.056 | 1.15 | 0.802 | 1.03 | 0.949 | 0.97 | 0.931 | |
| Recessive | GG+GA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA | 3.07 | 0.045 | 1.32 | 0.476 | 1.59 | 0.305 | 1.48 | 0.585 | 1.51 | 0.477 | 1.64 | 0.316 | 0.51 | 0.069 | |
| Cdx2 | |||||||||||||||
| Dominant | GG | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA+GA | 0.53 | 0.215 | 1.05 | 0.886 | 0.67 | 0.310 | 0.85 | 0.803 | 1.48 | 0.485 | 0.56 | 0.193 | 0.74 | 0.351 | |
| Recessive | GG+GA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA | 1.07 | 0.912 | 1.18 | 0.640 | 1.38 | 0.466 | 0.31 | 0.269 | 1.63 | 0.372 | 1.40 | 0.495 | 0.60 | 0.148 | |
| TaqI | |||||||||||||||
| Dominant | TT | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| CC+TC | 0.78 | 0.758 | 0.80 | 0.615 | 0.74 | 0.644 | 2.07 | 0.390 | 0 | 0.998 | 2.80 | 0.057 | 0.93 | 0.869 | |
| BsmI | |||||||||||||||
| Dominant | GG | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||
| AA+GA | 1.08 | 0.910 | 0.51 | 0.119 | 0.78 | 0.674 | 1.42 | 0.671 | 0.31 | 0.270 | 2.00 | 0.189 | 0.93 | 0.857 | |
Note: P-values were calculated using the multivariate logistic regression analysis model, which included age.
Abbreviations: SNP, single-nucleotide polymorphism; HDL-C, high-density lipoprotein cholesterol; TG, triglycerides.
Figure 1Plot showing the linkage disequilibrium (LD) among vitamin D receptor (VDR) gene polymorphisms in D’ values.
Haplotype Analysis Results Between Overweight/Obese and Healthy Children
| Haplotypes (TaqI-ApaI-BsmI -FokI-Cdx2) | Frequency n (%) | OR | 95% CI | ||
|---|---|---|---|---|---|
| Overweight/Obesity Children | Controls | ||||
| T-A-G-G-A | 14.22 (6.8) | 5.48 (3.9) | 1.808 | 0.246 | 0.657 ~ 4.973 |
| T-A-G-G-G | 16.63 (8.0) | 13.91 (9.8) | 0.786 | 0.529 | 0.371 ~ 1.665 |
| T-A-G-A-A | 17.08 (8.2) | 5.36 (3.8) | 2.261 | 0.101 | 0.834 ~ 6.133 |
| T-A-G-A-G | 7.77 (3.7) | 6.98 (4.9) | 0.740 | 0.572 | 0.259 ~ 2.109 |
| T-C-G-G-A | 29.50 (14.2) | 22.57 (15.9) | 0.859 | 0.620 | 0.471 ~ 1.566 |
| T-C-G-G-G | 32.78 (15.8) | 33.44 (23.5) | 0.590 | 0.056 | 0.342 ~ 1.017 |
| T-C-G-A-A | 28.04 (13.5) | 20.37 (14.3) | 0.915 | 0.778 | 0.492 ~ 1.701 |
| T-C-G-A-G | 43.98 (21.1) | 19.89 (14.0) | 1.637 | 0.097 | 0.912 ~ 2.938 |
Abbreviations: OR, odds ratio; CI, confidence interval.