| Literature DB >> 30967970 |
Hans Kollenda1, Hagen Frickmann1,2, Rania Ben Helal3, Dorothea Franziska Wiemer4, Habiba Naija3, Mohamed Sélim El Asli3, Melanie Egold5, Joachim Jakob Bugert5, Susann Handrick5, Roman Wölfel5, Farouk Barguellil3, Mohamed Ben Moussa3.
Abstract
BACKGROUND: Carbapenem-resistance is frequently detected in Enterobacteriaceae isolated from patients in Tunisia. The study was performed to identify frequent carbapenemases in Tunisian isolates.Entities:
Keywords: Enterobacteriaceae; Mediterranean; Tunisia; carbapenemase; epidemiology; military hospital; resistance
Year: 2019 PMID: 30967970 PMCID: PMC6444801 DOI: 10.1556/1886.2018.00033
Source DB: PubMed Journal: Eur J Microbiol Immunol (Bp) ISSN: 2062-509X
Characteristics of isolates with the carbapenemase genes bla, and bla
| Identified carbapenemase | ||||
|---|---|---|---|---|
| Total number (percentage) | 153 (76.5%) | 14 (7.0%) | 5 (2.5%) | 3 (1.5%) |
| Years of isolation | 2014 ( | 2014 ( | 2014 ( | 2014 ( |
| Species | ||||
| Departments/units | Cardiologic ward (1/1), cardio-thoracic-surgical ward (2/2), emergency department (5/6), outpatient departments (3/6), general surgical ward (2/4), intensive care unit (109/130), internal medicine department (5/6), neonatological ward (17/22), neurosurgical ward (3/3), orthopedic ward (1/2), pediatric ward (1/3), pneumological ward (1/1), pneumophtisiology unit (1/1), urological ward (1/3), vascular surgical ward (1/5) | Emergency department (1/6), intensive care unit (9/130), neonatological ward (2/22), vascular surgical ward (2/5) | Outpatient departments (1/6), intensive care unit (2/130), pediatric ward (1/3), neonatological ward (1/22) | Intensive care unit (3/130) |
| Sample materials | Anal swabs (25/36), axillary swabs (2/2), swab from a not-further defined location (1/1), materials from broncho-alveolar lavages (5/6), blood cultures (49/55), CBES (5/5), cerebrospinal fluid (1/1), exudates from the ear (1/2), biofilms at endotracheal tubes (3/3), gastric samples (1/1), KT (16/21), PTS (12/13), pus (7/18), medical device (1/1), urine (24/34) | Anal swabs (4/36), blood cultures (3/55), KT (3/21), pus (2/18), urine (2/34) | Anal swabs (1/36), blood cultures (2/55), urine (2/34) | Anal swabs (2/36), blood cultures (1/55) |
Denominators show total numbers of isolates of the respective species.
Denominators show total numbers of isolates from the respective wards.
Denominators show total numbers of isolates from the respective sample materials.
Matches and mismatches of commercial amPLEX PCR as applied in a previous study [28] and in-house PCRs as applied in the present study with 107 out of 197 strains for the carbapenemase genes bla and bla
| Detected with in-house PCR [ | |||
|---|---|---|---|
| Positive for | Negative for | ||
| Detected with the “Hyplex® Superbug ID system”(amPLEX Diagnostics, Gars-Bahnhof, Germany) | Positive for | 70 | 14 |
| Negative for | 11 | 12 | |
| Positive for | Negative for | ||
| Positive for | 2 | 2 | |
| Negative for | 1 | 102 | |
| Positive for | Negative for | ||
| Positive for | 2 | 9 | |
| Negative for | 2 | 94 | |
| 5’-CGT-TTG-AAA-ATC-TGG-GTA-CGC-AAA-CGC-TTA-TGG-ATT-GGG-TGG-CTA-AGA-CTA-TGA-AGC-CGA-AGA-AAG-TAG-TAG-CCA-TCA-ATA-CGC-ACT-TTC-ATT-TGG-ACG-GCA-CGG-GTG-GAA-ATG-AAA-TTT-ACA-AGA-AGA-TGG-GCG-CGG-AGA-CGT-GGT-CGA-GCG-ATC-TGA-CAA-AGC-AGT-TGC-GAC-TTG-AGG-AAA-ACA-AGA-AAG-ACC-GGA-TAA-AAG-CAG-CTG-AGT-TCT-ATA-AAA-ACG-AGG-ATC-TGA-AGC-GAA-GGA-TTC-TGA-GTT-CCC-ATC-CTG-TTC-CAG-CGG-ATA-ATG-TTT-TTG-A-3’ |
| 5’-ATG-CCC-CTG-AAG-GTG-TAC-GGA-AAC-ACC-TGG-TAC-GTT-GGC-ACC-TGC-GGC-ATC-AGT-GCG-CTG-CTG-GTC-ACT-TCC-GAC-GCG-GGC-CAT-ATC-CTG-GTC-GAT-GCC-GCC-ACG-CCG-CAG-GCG-GGC-CCA-CAG-ATC-CTG-GCC-AAC-ATC-CGC-GCA-CTC-GGT-TTC-AGG-CCG-GAG-GAC-GTG-CGC-GCC-ATC-GTG-TTC-TCG-CAC-GAG-CAT-TTC-GAC-CAT-GCC-GGC-AGC-CTC-GCC-GAA-CTG-CAG-AAG-GCC-ACG-GGT-GCA-CCG-GTG-TAC-GCG-CGC-GCG-CCC-GCG-ATC-GAC-ACG-CTG-AAG-CGC-GGC-CTG-CCG-GAC-CGC-ACC-GAC-CCG-CAA-TTC-GAG-GTG-GCC-GAA-CCC-GTT-G-3’ |
| 5’-TGG-CGA-CCA-ACG-GTT-TGG-CGA-TCT-GGT-TTT-CCG-CCA-GCT-CGC-ACC-GAA-TGT-CTG-GCA-GCA-CAC-TTC-CTA-TCT-CGA-CAT-GCC-GGG-TTT-CGG-GGC-AGT-CGC-TTC-CAA-CGG-TTT-GAT-CGT-CAG-GGA-TGG-CGG-CCG-CGT-GCT-GTT-GGT-CGA-TAC-CGC-CTG-GAC-CGA-TGA-CCA-GAC-CGC-CCA-GAT-CCT-CAA-CTG-GAT-CAA-GCA-GGA-GAT-CAA-CCT-GCC-GGT-CGC-GCT-GGC-GGT-GGT-GAC-TCA-CGC-GCA-TCA-GGA-CAA-GAT-GGG-CGG-TAT-GGA-CGC-GCT-GCA-TGC-GGC-GGG-GAT-TGC-GAC-TTA-TGC-CAA-TGC-GTT-GTC-GAA-CCA-GCT-TGC-CCC-GCA-AGA-GGG-GCT-GGT-TGC-GGC-GCA-ACA-CAG-CCT-GAC-TTT-CGC-CGC-CAA-TGG-CTG-GGT-CGA-ACC-AGC-AAC-CGC-GCC-CAA-CTT-TGG-CCC-GCT-CAA-GGT-ATT-TTA-CCC-CGG-CCC-CGG-CCA-CAC-CAG-TGA-CAA-TAT-CAC-CGT-TGG-GAT-CGA-CGG-CAC-CGA-CAT-CGC-TTT-TGG-TGG-CTG-CCT-GAT-CAA-GGA-CAG-CAA-GGC-CAA-GTC-GCT-CGG-CAA-TCT-CGG-TGA-TGC-CGA-CAC-TGA-GCA-CTA-CGC-CGC-GTC-AGC-GCG-CGC-GTT-TGG-TGC-GGC-GTT-CCC-CAA-GGC-CAG-CAT-GAT-CGT-GAT-GAG-CCA-TTC-CGC-CCC-CGA-TAG-3’ |
| 5’-CAA-GAG-TAC-AAG-GGA-TTC-GGC-ATC-GTT-AAA-AAA-CAA-GGC-TTA-GTA-GTT-CTT-GAC-AAT-CAC-AAG-GCA-TAT-CTC-ATC-GAC-ACT-CCA-GCT-TCC-GCA-GGA-GAT-ACT-GAA-AAG-CTA-GTA-AAC-TGG-CTC-GAA-AAA-AAT-GAT-TTC-ACT-GTC-AAT-GGA-AGC-ATT-TCA-ACA-CAT-TTC-CAC-GAC-GAC-AGT-ACT-GCT-GGG-ATA-GAG-TGG-CTT-AAT-ACA-AAG-TCC-ATC-CCC-ACA-TAT-GCA-TCT-AAA-TTG-ACA-AAT-GAA-TTG-CTA-AAT-AAA-AAT-GGC-AAA-ACT-CAA-GCC-AAG-CAC-TCT-TTT-GAT-AAA-GAG-AGC-TTT-TGG-TTG-GTC-AAA-AAT-AAA-ATT-GAA-ATT-TTT-TAT-CCA-GGC-CCA-GGA-CAC-ACT-CAA-GAT-AAC-GAA-GTT-GTC-TGG-ATA-CCT-AAT-AAA-AAA-ATC-CTA-TTC-GGG-GGC-TGT-TTT-ATA-AAA-CCG-AAT-GGC-CTT-GGC-AAT-CTA-AGT-GAC-GCA-AAT-TTG-GAA-GCT-TGG-CCA-GGC-TCC-GCA-AAA-AAA-ATG-ATA-TCA-AAA-TAC-AGT-AAG-GCA-AAA-CTT-GTT-ATC-CCA-AGC-CAC-AGT-GAA-ATC-GGA-GAC-GCA-TCA-CTA-TTG-AAA-CTC-ACA-TGG-GAA-CAG-GCC-ATT-AAA-GGT-T-3’ |