Literature DB >> 30942582

Identification of the Formycin A Biosynthetic Gene Cluster from Streptomyces kaniharaensis Illustrates the Interplay between Biological Pyrazolopyrimidine Formation and de Novo Purine Biosynthesis.

Shao-An Wang, Yeonjin Ko, Jia Zeng, Yujie Geng, Daan Ren, Yasushi Ogasawara, Seema Irani, Yan Zhang, Hung-Wen Liu.   

Abstract

Formycin A is a potent purine nucleoside antibiotic with a C-glycosidic linkage between the ribosyl moiety and the pyrazolopyrimidine base. Herein, a cosmid is identified from the Streptomyces kaniharaensis genome library that contains the for gene cluster responsible for the biosynthesis of formycin. Subsequent gene deletion experiments and in vitro characterization of the forBCH gene products established their catalytic functions in formycin biosynthesis. Results also demonstrated that PurH from de novo purine biosynthesis plays a key role in pyrazolopyrimidine formation during biosynthesis of formycin A. The participation of PurH in both pathways represents a good example of how primary and secondary metabolism are interlinked.

Entities:  

Year:  2019        PMID: 30942582      PMCID: PMC6612245          DOI: 10.1021/jacs.9b00241

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

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Journal:  J Enzyme Inhib       Date:  2001

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Authors:  M ISHIZUKA; T TAKEUCHI; K NITTA; G KOYAMA; M HORI; H UMEZAWA
Journal:  J Antibiot (Tokyo)       Date:  1964-05       Impact factor: 2.649

3.  A NEW ANTIBIOTIC, FORMYCIN.

Authors:  M HORI; T TAKITA; G KOYAMA; T TADEUCHI; H UMEZAWA
Journal:  J Antibiot (Tokyo)       Date:  1964-05       Impact factor: 2.649

Review 4.  De novo purine nucleotide biosynthesis.

Authors:  H Zalkin; J E Dixon
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1992

5.  Formycins A and B and some analogues: selective inhibitors of bacterial (Escherichia coli) purine nucleoside phosphorylase.

Authors:  A Bzowska; E Kulikowska; D Shugar
Journal:  Biochim Biophys Acta       Date:  1992-04-17

6.  Biosynthesis of formycin. Formation of formycin from formycin B.

Authors:  D Ochi; S Yashima; Y Eguchi
Journal:  J Antibiot (Tokyo)       Date:  1975-12       Impact factor: 2.649

7.  Formycin A and its N-methyl analogues, specific inhibitors of E. coli purine nucleoside phosphorylase (PNP): induced tautomeric shifts on binding to enzyme, and enzyme-->ligand fluorescence resonance energy transfer.

Authors:  B Kierdaszuk; A Modrak-Wójcik; J Wierzchowski; D Shugar
Journal:  Biochim Biophys Acta       Date:  2000-01-03

8.  Mechanism of 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase, a key enzyme in the methanopterin biosynthetic pathway.

Authors:  Razvan V Dumitru; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2004-07-15       Impact factor: 5.157

9.  Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway.

Authors:  E Meyer; N J Leonard; B Bhat; J Stubbe; J M Smith
Journal:  Biochemistry       Date:  1992-06-02       Impact factor: 3.162

10.  Structural insights into the avian AICAR transformylase mechanism.

Authors:  Dennis W Wolan; Samantha E Greasley; G Peter Beardsley; Ian A Wilson
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

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  11 in total

1.  Characterization of the coformycin biosynthetic gene cluster in Streptomyces kaniharaensis.

Authors:  Daan Ren; Mark W Ruszczycky; Yeonjin Ko; Shao-An Wang; Yasushi Ogasawara; Minje Kim; Hung-Wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-29       Impact factor: 11.205

2.  Identification of the C-Glycoside Synthases during Biosynthesis of the Pyrazole-C-Nucleosides Formycin and Pyrazofurin.

Authors:  Daan Ren; Shao-An Wang; Yeonjin Ko; Yujie Geng; Yasushi Ogasawara; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-07       Impact factor: 15.336

3.  Comparative Investigation into Formycin A and Pyrazofurin A Biosynthesis Reveals Branch Pathways for the Construction of C-Nucleoside Scaffolds.

Authors:  Meng Zhang; Peichao Zhang; Gudan Xu; Wenting Zhou; Yaojie Gao; Rong Gong; You-Sheng Cai; Hengjiang Cong; Zixin Deng; Neil P J Price; Xiangzhao Mao; Wenqing Chen
Journal:  Appl Environ Microbiol       Date:  2020-01-07       Impact factor: 4.792

Review 4.  Recent advances in the biosynthesis of nucleoside antibiotics.

Authors:  Taro Shiraishi; Tomohisa Kuzuyama
Journal:  J Antibiot (Tokyo)       Date:  2019-09-25       Impact factor: 2.649

5.  PMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis.

Authors:  Sisi Gao; Huanting Liu; Valérie de Crécy-Lagard; Wen Zhu; Nigel G J Richards; James H Naismith
Journal:  Chem Commun (Camb)       Date:  2019-11-28       Impact factor: 6.222

6.  Divergent Biosynthesis of C-Nucleoside Minimycin and Indigoidine in Bacteria.

Authors:  Liyuan Kong; Gudan Xu; Xiaoqin Liu; Jingwen Wang; Zenglin Tang; You-Sheng Cai; Kun Shen; Weixin Tao; Yu Zheng; Zixin Deng; Neil P J Price; Wenqing Chen
Journal:  iScience       Date:  2019-11-25

7.  Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.

Authors:  Sisi Gao; Ashish Radadiya; Wenbo Li; Huanting Liu; Wen Zhu; Valérie de Crécy-Lagard; Nigel G J Richards; James H Naismith
Journal:  Chem Commun (Camb)       Date:  2020-06-09       Impact factor: 6.222

8.  Nitric oxide as a source for bacterial triazole biosynthesis.

Authors:  Guiyun Zhao; Yuan-Yang Guo; Shunyu Yao; Xinjie Shi; Longxian Lv; Yi-Ling Du
Journal:  Nat Commun       Date:  2020-03-31       Impact factor: 14.919

9.  Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557.

Authors:  Wen Zhu; Xuan Liu; Margaret Hughes; Valérie de Crécy-Lagard; Nigel G J Richards
Journal:  Microbiol Resour Announc       Date:  2020-04-02

10.  Oxazinomycin arrests RNA polymerase at the polythymidine sequences.

Authors:  Ranjit K Prajapati; Petja Rosenqvist; Kaisa Palmu; Janne J Mäkinen; Anssi M Malinen; Pasi Virta; Mikko Metsä-Ketelä; Georgiy A Belogurov
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

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