Literature DB >> 16712339

Wringing out DNA.

Timothée Lionnet1, Sylvain Joubaud, Richard Lavery, David Bensimon, Vincent Croquette.   

Abstract

The chiral nature of DNA plays a crucial role in cellular processes. Here we use magnetic tweezers to explore one of the signatures of this chirality, the coupling between stretch and twist deformations. We show that the extension of a stretched DNA molecule increases linearly by 0.42 nm per excess turn applied to the double helix. This result contradicts the intuition that DNA should lengthen as it is unwound and get shorter with overwinding. We then present numerical results of energy minimizations of torsionally restrained DNA that display a behavior similar to the experimental data and shed light on the molecular details of this surprising effect.

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Year:  2006        PMID: 16712339     DOI: 10.1103/PhysRevLett.96.178102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  31 in total

1.  Functional specificity of a protein-DNA complex mediated by two arginines bound to the minor groove.

Authors:  Jesús Mendieta; Laura Pérez-Lago; Margarita Salas; Ana Camacho
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

2.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

3.  Sequence-dependent twist-stretch coupling in DNA.

Authors:  Timothée Lionnet; Filip Lankas
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

4.  On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension.

Authors:  Jeff Wereszczynski; Ioan Andricioaei
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

Review 5.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

6.  A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.

Authors:  Michael Y Tolstorukov; Andrew V Colasanti; David M McCandlish; Wilma K Olson; Victor B Zhurkin
Journal:  J Mol Biol       Date:  2007-05-24       Impact factor: 5.469

7.  Strain-dependent twist-stretch elasticity in chiral filaments.

Authors:  M Upmanyu; H L Wang; H Y Liang; R Mahajan
Journal:  J R Soc Interface       Date:  2008-03-06       Impact factor: 4.118

8.  PREDICTED EFFECTS OF LOCAL CONFORMATIONAL COUPLING AND EXTERNAL RESTRAINTS ON THE TORSIONAL PROPERTIES OF SINGLE DNA MOLECULES.

Authors:  Atsushi Matsumoto; Wilma K Olson
Journal:  Multiscale Model Simul       Date:  2006       Impact factor: 1.930

Review 9.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

10.  Structural Flexibility of DNA-RNA Hybrid Duplex: Stretching and Twist-Stretch Coupling.

Authors:  Ju-Hui Liu; Kun Xi; Xi Zhang; Lei Bao; Xinghua Zhang; Zhi-Jie Tan
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

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