Literature DB >> 32569525

Single-Molecule Studies of Protein Folding with Optical Tweezers.

Carlos Bustamante1,2, Lisa Alexander2, Kevin Maciuba3, Christian M Kaiser4.   

Abstract

Manipulation of individual molecules with optical tweezers provides a powerful means of interrogating the structure and folding of proteins. Mechanical force is not only a relevant quantity in cellular protein folding and function, but also a convenient parameter for biophysical folding studies. Optical tweezers offer precise control in the force range relevant for protein folding and unfolding, from which single-molecule kinetic and thermodynamic information about these processes can be extracted. In this review, we describe both physical principles and practical aspects of optical tweezers measurements and discuss recent advances in the use of this technique for the study of protein folding. In particular, we describe the characterization of folding energy landscapes at high resolution, studies of structurally complex multidomain proteins, folding in the presence of chaperones, and the ability to investigate real-time cotranslational folding of a polypeptide.

Entities:  

Keywords:  co-translational folding; molecular chaperones; optical tweezers; protein folding

Mesh:

Substances:

Year:  2020        PMID: 32569525      PMCID: PMC7487275          DOI: 10.1146/annurev-biochem-013118-111442

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  91 in total

1.  Mechanical unfolding intermediates in titin modules.

Authors:  P E Marszalek; H Lu; H Li; M Carrion-Vazquez; A F Oberhauser; K Schulten; J M Fernandez
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

2.  Folding and assembly of the large molecular machine Hsp90 studied in single-molecule experiments.

Authors:  Markus Jahn; Johannes Buchner; Thorsten Hugel; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

3.  Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules.

Authors:  Robert B Best; Emanuele Paci; Gerhard Hummer; Olga K Dudko
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

4.  The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules detected under native conditions.

Authors:  T M Raschke; S Marqusee
Journal:  Nat Struct Biol       Date:  1997-04

5.  Protein misfolding occurs by slow diffusion across multiple barriers in a rough energy landscape.

Authors:  Hao Yu; Derek R Dee; Xia Liu; Angela M Brigley; Iveta Sosova; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-24       Impact factor: 11.205

6.  Translation and folding of single proteins in real time.

Authors:  Florian Wruck; Alexandros Katranidis; Knud H Nierhaus; Georg Büldt; Martin Hegner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

7.  Limitations of constant-force-feedback experiments.

Authors:  Phillip J Elms; John D Chodera; Carlos J Bustamante; Susan Marqusee
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

8.  Nucleotides regulate the mechanical hierarchy between subdomains of the nucleotide binding domain of the Hsp70 chaperone DnaK.

Authors:  Daniela Bauer; Dale R Merz; Benjamin Pelz; Kelly E Theisen; Gail Yacyshyn; Dejana Mokranjac; Ruxandra I Dima; Matthias Rief; Gabriel Žoldák
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

9.  Energetic dependencies dictate folding mechanism in a complex protein.

Authors:  Kaixian Liu; Xiuqi Chen; Christian M Kaiser
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

10.  Measurement of the effect of monovalent cations on RNA hairpin stability.

Authors:  Jeffrey Vieregg; Wei Cheng; Carlos Bustamante; Ignacio Tinoco
Journal:  J Am Chem Soc       Date:  2007-11-13       Impact factor: 15.419

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  24 in total

Review 1.  Forces of Change: Optical Tweezers in Membrane Remodeling Studies.

Authors:  Sudheer K Cheppali; Raviv Dharan; Raya Sorkin
Journal:  J Membr Biol       Date:  2022-05-26       Impact factor: 1.843

2.  Single-molecule manipulation of macromolecules on GUV or SUV membranes using optical tweezers.

Authors:  Yukun Wang; Avinash Kumar; Huaizhou Jin; Yongli Zhang
Journal:  Biophys J       Date:  2021-11-20       Impact factor: 4.033

3.  The force required to remove tubulin from the microtubule lattice by pulling on its α-tubulin C-terminal tail.

Authors:  Yin-Wei Kuo; Mohammed Mahamdeh; Yazgan Tuna; Jonathon Howard
Journal:  Nat Commun       Date:  2022-06-25       Impact factor: 17.694

Review 4.  A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.

Authors:  Mahmudur Rahman; Kazi Rafiqul Islam; Md Rashedul Islam; Md Jahirul Islam; Md Rejvi Kaysir; Masuma Akter; Md Arifur Rahman; S M Mahfuz Alam
Journal:  Micromachines (Basel)       Date:  2022-06-18       Impact factor: 3.523

5.  New insights into the folding-unfolding mechanism and conformations of cytochrome C.

Authors:  Jiayu Li; Hongbin Li
Journal:  Chem Sci       Date:  2022-05-30       Impact factor: 9.969

Review 6.  Chaperoning SNARE Folding and Assembly.

Authors:  Yongli Zhang; Frederick M Hughson
Journal:  Annu Rev Biochem       Date:  2021-04-06       Impact factor: 23.643

7.  Co-translational folding of nascent polypeptides: Multi-layered mechanisms for the efficient biogenesis of functional proteins.

Authors:  Kevin Maciuba; Nandakumar Rajasekaran; Xiuqi Chen; Christian M Kaiser
Journal:  Bioessays       Date:  2021-05-13       Impact factor: 4.653

8.  Facile tethering of stable and unstable proteins for optical tweezers experiments.

Authors:  Kevin Maciuba; Fan Zhang; Christian M Kaiser
Journal:  Biophys J       Date:  2021-05-12       Impact factor: 3.699

9.  Reproducibility in the unfolding process of protein induced by an external electric field.

Authors:  Anna Sinelnikova; Thomas Mandl; Christofer Östlin; Oscar Grånäs; Maxim N Brodmerkel; Erik G Marklund; Carl Caleman
Journal:  Chem Sci       Date:  2020-12-26       Impact factor: 9.825

Review 10.  Optical manipulation: advances for biophotonics in the 21st century.

Authors:  Stella Corsetti; Kishan Dholakia
Journal:  J Biomed Opt       Date:  2021-07       Impact factor: 3.170

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