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Literature DB >> 26020499

BigDataViewer: visualization and processing for large image data sets.

Tobias Pietzsch¹, Stephan Saalfeld², Stephan Preibisch³, Pavel Tomancak¹.

Abstract

Mesh：

Year: 2015 PMID： 26020499 DOI： 10.1038/nmeth.3392

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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7 in total

1. Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors: Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal: Science Date: 2004-08-13 Impact factor: 47.728

2. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.

Authors: Fernando Amat; William Lemon; Daniel P Mossing; Katie McDole; Yinan Wan; Kristin Branson; Eugene W Myers; Philipp J Keller
Journal: Nat Methods Date: 2014-07-20 Impact factor: 28.547

3. Fiji: an open-source platform for biological-image analysis.

Authors: Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal: Nat Methods Date: 2012-06-28 Impact factor: 28.547

4. Metadata matters: access to image data in the real world.

Authors: Melissa Linkert; Curtis T Rueden; Chris Allan; Jean-Marie Burel; Will Moore; Andrew Patterson; Brian Loranger; Josh Moore; Carlos Neves; Donald Macdonald; Aleksandra Tarkowska; Caitlin Sticco; Emma Hill; Mike Rossner; Kevin W Eliceiri; Jason R Swedlow
Journal: J Cell Biol Date: 2010-05-31 Impact factor: 10.539

5. Web tools for large-scale 3D biological images and atlases.

Authors: Zsolt L Husz; Nicholas Burton; Bill Hill; Nestor Milyaev; Richard A Baldock
Journal: BMC Bioinformatics Date: 2012-06-07 Impact factor: 3.169

6. CATMAID: collaborative annotation toolkit for massive amounts of image data.

Authors: Stephan Saalfeld; Albert Cardona; Volker Hartenstein; Pavel Tomancak
Journal: Bioinformatics Date: 2009-04-17 Impact factor: 6.937

7. ImgLib2--generic image processing in Java.

Authors: Tobias Pietzsch; Stephan Preibisch; Pavel Tomancák; Stephan Saalfeld
Journal: Bioinformatics Date: 2012-09-08 Impact factor: 6.937

7 in total

74 in total

1. Efficient processing and analysis of large-scale light-sheet microscopy data.

Authors: Fernando Amat; Burkhard Höckendorf; Yinan Wan; William C Lemon; Katie McDole; Philipp J Keller
Journal: Nat Protoc Date: 2015-10-01 Impact factor: 13.491

2. Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors: Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal: Nat Protoc Date: 2015-10-22 Impact factor: 13.491

3. Tilt-invariant scanned oblique plane illumination microscopy for large-scale volumetric imaging.

Authors: Manish Kumar; Yevgenia Kozorovitskiy
Journal: Opt Lett Date: 2019-04-01 Impact factor: 3.776

4. DEVILS: a tool for the visualization of large datasets with a high dynamic range.

Authors: Romain Guiet; Olivier Burri; Nicolas Chiaruttini; Olivier Hagens; Arne Seitz
Journal: F1000Res Date: 2020-11-27

5. BioCell2XML: a novel tool for converting cell lineage data from SIMI BioCell to MaMuT (Fiji).

Authors: Markus Pennerstorfer; Günther Loose; Carsten Wolff
Journal: Dev Genes Evol Date: 2019-05-22 Impact factor: 0.900

Review 6. Imaging morphogenesis.

Authors: Donald M Bell
Journal: Philos Trans R Soc Lond B Biol Sci Date: 2017-05-19 Impact factor: 6.237