Literature DB >> 30925840

Single Amino Acid Substitutions in Stickers, but Not Spacers, Substantially Alter UBQLN2 Phase Transitions and Dense Phase Material Properties.

Yiran Yang, Holly B Jones, Thuy P Dao, Carlos A Castañeda.   

Abstract

UBQLN2 450-624 oligomerizes and undergoes temperature-responsive liquid-liquid phase transitions following a closed-loop temperature-concentration phase diagram. We recently showed that disease-linked mutations to UBQLN2 450-624 impart highly varying effects to its phase behavior, ranging from little change to significant decrease of saturation concentration and formation of gels and aggregates. However, how single mutations lead to these properties is unknown. Here, we use UBQLN2 450-624 as a model system to study the sequence determinants of phase separation. We hypothesized that UBQLN2 450-624 regions previously identified to promote its oligomerization are the "stickers" that drive interchain interactions and phase separation. We systematically investigated how phase behavior is affected by all 19 possible single amino acid substitutions at three sticker and two "spacer" (sequences separating stickers) positions. Overall, substitutions to stickers, but not spacers, substantially altered the shape of the phase diagram. Within the sticker regions, increasing hydrophobicity decreased saturation concentrations at low temperatures and enhanced oligomerization propensity and viscoelasticity of the dense phase. Conversely, substitutions to acidic residues at all positions greatly increased saturation concentrations. Our data demonstrate that single amino acid substitutions follow a molecular code to tune phase transition behavior of biopolymers.

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Year:  2019        PMID: 30925840     DOI: 10.1021/acs.jpcb.9b01024

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  21 in total

1.  Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?

Authors:  Thuy P Dao; Carlos A Castañeda
Journal:  Bioessays       Date:  2020-09-03       Impact factor: 4.345

2.  Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.

Authors:  Benjamin S Schuster; Gregory L Dignon; Wai Shing Tang; Fleurie M Kelley; Aishwarya Kanchi Ranganath; Craig N Jahnke; Alison G Simpkins; Roshan Mammen Regy; Daniel A Hammer; Matthew C Good; Jeetain Mittal
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

3.  Phase separation in biology and disease-a symposium report.

Authors:  Jennifer Cable; Clifford Brangwynne; Geraldine Seydoux; David Cowburn; Rohit V Pappu; Carlos A Castañeda; Luke E Berchowitz; Zhijuan Chen; Martin Jonikas; Abby Dernburg; Tanja Mittag; Nicolas L Fawzi
Journal:  Ann N Y Acad Sci       Date:  2019-06-14       Impact factor: 5.691

4.  ALS-Linked Mutations Affect UBQLN2 Oligomerization and Phase Separation in a Position- and Amino Acid-Dependent Manner.

Authors:  Thuy P Dao; Brian Martyniak; Ashley J Canning; Yongna Lei; Erica G Colicino; Michael S Cosgrove; Heidi Hehnly; Carlos A Castañeda
Journal:  Structure       Date:  2019-04-11       Impact factor: 5.006

5.  An Introduction to the Stickers-and-Spacers Framework as Applied to Biomolecular Condensates.

Authors:  Garrett M Ginell; Alex S Holehouse
Journal:  Methods Mol Biol       Date:  2023

Review 6.  Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery.

Authors:  Tongyin Zheng; Yiran Yang; Carlos A Castañeda
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

7.  Improved coarse-grained model for studying sequence dependent phase separation of disordered proteins.

Authors:  Roshan Mammen Regy; Jacob Thompson; Young C Kim; Jeetain Mittal
Journal:  Protein Sci       Date:  2021-05-24       Impact factor: 6.993

8.  Previously uncharacterized interactions between the folded and intrinsically disordered domains impart asymmetric effects on UBQLN2 phase separation.

Authors:  Tongyin Zheng; Sarasi K K Galagedera; Carlos A Castañeda
Journal:  Protein Sci       Date:  2021-06-05       Impact factor: 6.993

9.  Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties.

Authors:  Benjamin S Schuster; Roshan Mammen Regy; Elliott M Dolan; Aishwarya Kanchi Ranganath; Nina Jovic; Sagar D Khare; Zheng Shi; Jeetain Mittal
Journal:  J Phys Chem B       Date:  2021-03-04       Impact factor: 3.466

Review 10.  Polyphasic linkage and the impact of ligand binding on the regulation of biomolecular condensates.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Biophys Rev       Date:  2021-06-15
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